Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273668g00001 GTTAGTGACTATCGGCAATCTCTCCAGTTTAAGAACTTGAACGCAGAAAAACAAAATATACAATTGGAGGTTATTAGAGGCGGTAGAACAATAAAATTATCCATATTTGATATTGTTGTTGGTGATGTAGTACCCCTTAAAATAGGTGATCAGGTTCCTGCTGATGGAGTTTTAATCACTGGTCACTCACTTGCAATTGATGAATCGAGTATGACTGGCGAAAGCAAAATTGTTCAGAAGGATCACAAAGCACCTTTTTTGATGTCCGGTTGCAAAGTAGCAGATGGAGTTGGTACTATGCTGATAACCGGTGTTGGCATTAACACTGAATGGGGACTGTTGATGGCAAGTATCTCAGAGGATAATGGAGAAGAGACTCCGTTACAGGTACGTTTGAATGGAGTAGCAACATTTGTTGGCATAGTTGGGCTTACCGTCGCCGCTTCCGTTCTTGCAGTCCTGTTGGGAAGATACTTCTCTGGCAATACAAAAGATGAAGACGGGCAAGTGCAATTTGTAGCGGGAAAGACTAGTATTGATAATGCAGTTGACGGGGTCATCAAAATTTTTACCATTGCAGTTACAATTGTTGTTGTTGCAGTGCCTGAAGGTCTACCTTTGGCAGTTACCTTAACCCTGGCCTACTCTATGCGGAAAATGATGGCAGACAAGGCATTGGTTCGAAGGCTGTCAGCATGTGAAACTATGGGCTCCGCCACAACAATTTGCAGTGATAAGACTGGGACTTTGACCTTGAATCAGATGACTGTGGTTGAGGCATATGCCGGGAGGAAGAAACTAGATCCACCCGATGACTCGTCAAAGTTGCATCCGGAAGTTCTATCCCTCATAAATGAAGGCATTGCACAAAATACAACAGGAAATGTTTTTGTGCCTAAGGATGGTGGAGAGACAGAGATTTCAGGATCTCCAACAGAGAAGGCAATTCTTTCTTGGGCCACGAAGTTGGGGATGAATTTTGAGCTTACCAGATCAAGTTCGACAATTCTCCACGTGTTCCCCTTCAATTCTGAGAAAAAGCGAGGAGGTGTTGCTCTAAAGCTGGGGGCGTCTGGAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTTGGAGCCTGCACTCAATATCTTGATTCAAATGGTCAGTTGCAATCTATTGAAAAAGACAAGGCATTCTTCATGGAGGCTATTGAAGACATGGCTGTGCAGAGCTTGCGCTGTGTTGCCATTGCGTACAGACCATATGAATTGGACGAAGTTCCCTCCAAGCAAGAGGATTTGGACAAGTGGTCTTTGCCAGAACAGGAGCTTGTTTTGCTTGCTATTGTTGGGATAAAGGATCCTTGCCGTCCCGGAGTGGAAGAAGCAGTAAGATTATGCTCTCAAGCAGGTGTTAAGGTGCGCATGGTTACAGGGGACAACCTGAATACAGCAAAGGCAATAGCTTTGGAGTGCGGAATACTGAGCTCAAGGGAAGAGGCGGTGGAGCCAAATATAATTGAAGGAAAGAAATTCCGTGAACTATCTGAAATAGAAAGGGAACAAGTTGCTAAGAAAATAACTGTGATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTCGTGCAAGCGCTGCGTAAATTGGGTGAAGTTGTTGCTGTCACGGGGGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCTGATATTATAATTCTTGATGATAACTTCGCATCAGTAGTAAAGGTTGTTCGATGGGGTCGTTCAGTATATGCGAATATTCAAAAATTCATTCAGTTCCAGCTCACTGTTAACGTTGCTGCTCTTGTAATAAATGTTGTGGCCGCAGTATCTGCTGGTGAAGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTGAATCTAATCATGGACACTCTTGGAGCCCTTGCACTCGCTACAGAACCACCTACTGACAGCCTTATGCGCAGATCACCAGTTGGCCGAAGGGAATCTCTTATAACTAATGTCATGTGGAGGAACTTGATCGTACAGGCTATCTATCAAGTTACCGTTCTTCTCGTACTTAATTTCGGTTGGCAAAGTATTAATCTAGAAGAAGATCAAGATTCTAAATCTCACTCCTTACAAGTGAAGAACACTTTGATATTCAACACATTCGTCCTCTGCCAAATATTTAACGAGTTCAATGCTAGAAAAATAGATGAAATGTATGTCTTCAAGGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTTGGAGTGACATTTGTGCTTCAGATACTGATCATCGAGTTCCTCGGCAAGTTCACCTCAACAGTGCGCCTTAACTGGAAACTCTGGTTATTTTCTCTTGGTATTGGGATATTCAGCTGGCCTCTTGCTGTACTTGGAAAACTAATTCCAGTTCCTAAAACACCATGGTCACGGACCTTCAAGAAGCATATCAGGCGACTCAAGAAGTCTCGTAGTACTGCTCCTGCGCAACAACAATAG 2532 0.4352 VSDYRQSLQFKNLNAEKQNIQLEVIRGGRTIKLSIFDIVVGDVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVQKDHKAPFLMSGCKVADGVGTMLITGVGINTEWGLLMASISEDNGEETPLQVRLNGVATFVGIVGLTVAASVLAVLLGRYFSGNTKDEDGQVQFVAGKTSIDNAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYAGRKKLDPPDDSSKLHPEVLSLINEGIAQNTTGNVFVPKDGGETEISGSPTEKAILSWATKLGMNFELTRSSSTILHVFPFNSEKKRGGVALKLGASGVHIHWKGAAEIVLGACTQYLDSNGQLQSIEKDKAFFMEAIEDMAVQSLRCVAIAYRPYELDEVPSKQEDLDKWSLPEQELVLLAIVGIKDPCRPGVEEAVRLCSQAGVKVRMVTGDNLNTAKAIALECGILSSREEAVEPNIIEGKKFRELSEIEREQVAKKITVMGRSSPNDKLLLVQALRKLGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSAGEVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMRRSPVGRRESLITNVMWRNLIVQAIYQVTVLLVLNFGWQSINLEEDQDSKSHSLQVKNTLIFNTFVLCQIFNEFNARKIDEMYVFKGVTKNRLFMGIVGVTFVLQILIIEFLGKFTSTVRLNWKLWLFSLGIGIFSWPLAVLGKLIPVPKTPWSRTFKKHIRRLKKSRSTAPAQQQ 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273668g00001 843 PANTHER CATION TRANSPORTING ATPASE 1 815 - -
Stsc273668g00001 843 NCBIfam HAD-IC family P-type ATPase 182 268 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc273668g00001 843 NCBIfam HAD-IC family P-type ATPase 517 630 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc273668g00001 843 Pfam Cation transporting ATPase, C-terminus 635 813 IPR006068 -
Stsc273668g00001 843 Pfam E1-E2 ATPase 20 221 - -
Stsc273668g00001 843 PRINTS P-type cation-transporting ATPase superfamily signature 550 569 - -
Stsc273668g00001 843 PRINTS P-type cation-transporting ATPase superfamily signature 243 257 - -
Stsc273668g00001 843 PRINTS P-type cation-transporting ATPase superfamily signature 465 475 - -
Stsc273668g00001 843 PRINTS P-type cation-transporting ATPase superfamily signature 443 454 - -
Stsc273668g00001 843 PRINTS P-type cation-transporting ATPase superfamily signature 574 586 - -
Stsc273668g00001 843 PRINTS P-type cation-transporting ATPase superfamily signature 67 81 - -
Stsc273668g00001 843 Gene3D - 240 595 IPR023214 -
Stsc273668g00001 843 Gene3D - 253 450 IPR023299 GO:0000166
Stsc273668g00001 843 SFLD p-type atpase 225 602 IPR044492 -
Stsc273668g00001 843 NCBIfam calcium-translocating P-type ATPase, PMCA-type 1 815 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc273668g00001 843 Gene3D - 120 802 - -
Stsc273668g00001 843 SFLD C1.7: P-type atpase like 225 602 - -
Stsc273668g00001 843 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 817 IPR023298 -
Stsc273668g00001 843 FunFam Calcium-transporting ATPase 443 595 - -
Stsc273668g00001 843 ProSitePatterns E1-E2 ATPases phosphorylation site. 245 251 IPR018303 -
Stsc273668g00001 843 FunFam Calcium-transporting ATPase 9 plasma membrane-type 97 267 - -
Stsc273668g00001 843 FunFam Calcium-transporting ATPase 253 450 - -
Stsc273668g00001 843 FunFam Calcium-transporting ATPase 2 119 - -
Stsc273668g00001 843 Gene3D - 19 119 - -
Stsc273668g00001 843 FunFam Calcium-transporting ATPase 567 817 - -
Stsc273668g00001 843 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 250 447 IPR023299 GO:0000166
Stsc273668g00001 843 SUPERFAMILY HAD-like 241 655 IPR036412 -
Stsc273668g00001 843 Pfam haloacid dehalogenase-like hydrolase 240 564 - -
Stsc273668g00001 843 SUPERFAMILY Calcium ATPase, transduction domain A 21 116 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273668g00001 Stsc-Chr273668 3602 9834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273668g00001 1 836 Primary Pumps ATPases AT3G21180 79.306 0.0 1327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273668g00001 K01537 - gmx:100777143 1390.94