LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc273579g00001	ATGCGAGCTTCATGGGCTGATTTGGCTGCAAATTCTGCAGTTGAGAACGCTGGTGCTGGTGCTGGTACTTCAGCCAACAATGCTGGACCTGGTAACAGTTTACCTCCTTCACGGTCTACTTATGTGCCTCCACATCTGAGGAACCGGCCGCCTTCGGCTGAACCACCTGCTCCTGCGTATAGTGGCGGCACAACTTCTGGGGCGGGTACAGCTAATGCTGGATCACGTTGGGGTGCACCTCGTGGCGGTGAGTACCGTTCAGGGGGTGGTGGTGGCAGAGGAAGTGGATGGGGGAACAGAAGTGGGGGTTGGGATTGCGGAAGGGACCGTGAGGTCAATCCATTTGGAGATCAGGATGATACAGAGGAAGCATTTAATGAGCAAGAGAACTCGGGGATAAATTTTGATGCCTATGAGGACATTCCGGTGGAGACAAGTGGGAATAATGTGCCACCACCTGTGAATACATTTGCTGAGATTGACTTGGGTGAAGCGCTTAATGCTAATATAACAAGGTGCAAATATGTTAAGCCGACACCTGTTCAGCGGCATGCAATACCGATTTCCCTTGCTGGAAGGGATTTGATGGCCTGTGCACAGACTGGTTCCGGAAAGACTGCTGCCTTCTGTTTCCCGATTATCAGCGGAATTTTGAGGGGCCAACCTATGCAAAGGCCACCTCGAGGGGTGCGTACAGTTTATCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCAATGCAAATACATGACGAGGCAAGGAAATTTGCATACCAAACAGGGGTTAAGGTGGTTGTTGCTTATGGTGGCGCTCCAATAAACCATCAGCTACGAGATCTTGAGAAGGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATCAGATATCTAGCACTCGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTTGAACAAATGGATATGCCTCCCGCAGGTGTTAGACAGACAATGCTATTCAGTGCGACGTTTCCTAAAGAGATACAGAGACTAGCCTCCGACTTCCTGTCAAGCTACATTTTTCTCGCTGTTGGAAGAGTTGGGTCGAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAGGAGTCTGACAAGAGAAGTCATCTCATGGACCTTCTTCATGCACAGAGAGCAAATGGTGTTCATGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCCGATGCACTGGAACATTGGTTGTGCATGAATGGTTTTCCGGCTACTACTATTCATGGAGACAGGACCCAGCAGGAAAGAGAAATGGCATTAAGGTCATTTAAGAGTGGGAATACACCCATATTGGTTGCCACCGATGTGGCTGCACGCGGTCTTGATATTCCTCATGTTGCCCACGTGGTTAACTTCGACCTTCCCAATGACATTGATGACTACGTACACCGTATTGGAAGGACAGGACGTGCTGGAAAGAAAGGCCTCGCAACTGCATTCTTTAACGACAACAATGCTTCCCTTGCAAGGTCTTTAGCAGAACTAATGCAGGAAGCAAACCAAGAAGTGCCTGCATGGCTCTCACGGTATGCTGCTCGATCTTCATTTGGAGGTAGGAACCGCCGTTCGGGAGGAGGGCGTTTTGGTGGCCGAGACTTTCGAAGAGAAGGTTCCTTCAATAGGGGTGGTTCTGATTACTACAATGCAGGAAACAACAGTGCTGGATATGGGGCATCTGGTGGATATGGTGCCGGCGCATCAAGTGCCTGGGATTGA	1830	0.4896	MRASWADLAANSAVENAGAGAGTSANNAGPGNSLPPSRSTYVPPHLRNRPPSAEPPAPAYSGGTTSGAGTANAGSRWGAPRGGEYRSGGGGGRGSGWGNRSGGWDCGRDREVNPFGDQDDTEEAFNEQENSGINFDAYEDIPVETSGNNVPPPVNTFAEIDLGEALNANITRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRGQPMQRPPRGVRTVYPLALVLSPTRELSMQIHDEARKFAYQTGVKVVVAYGGAPINHQLRDLEKGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVHGKQALTLVFVETKKGADALEHWLCMNGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLAELMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRREGSFNRGGSDYYNAGNNSAGYGASGGYGAGASSAWD	609

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc273579g00001	609	FunFam	ATP-dependent RNA helicase RhlB	374	553	-	-
	Stsc273579g00001	609	Pfam	Helicase conserved C-terminal domain	395	510	IPR001650	-
	Stsc273579g00001	609	CDD	SF2_C_DEAD	383	519	-	-
	Stsc273579g00001	609	Gene3D	-	111	373	IPR027417	-
	Stsc273579g00001	609	Gene3D	-	374	553	IPR027417	-
	Stsc273579g00001	609	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	155	183	IPR014014	GO:0003724
	Stsc273579g00001	609	SMART	ultradead3	174	386	IPR014001	-
	Stsc273579g00001	609	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	125	549	-	-
	Stsc273579g00001	609	FunFam	Probable ATP-dependent RNA helicase DDX4	118	373	-	-
	Stsc273579g00001	609	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	186	371	IPR014001	-
	Stsc273579g00001	609	MobiDBLite	consensus disorder prediction	15	132	-	-
	Stsc273579g00001	609	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	236	526	IPR027417	-
	Stsc273579g00001	609	SMART	helicmild6	429	510	IPR001650	-
	Stsc273579g00001	609	CDD	DEADc_DDX3_DDX4	156	377	IPR044763	GO:0003724\|GO:0005524
	Stsc273579g00001	609	MobiDBLite	consensus disorder prediction	17	39	-	-
	Stsc273579g00001	609	Pfam	DEAD/DEAH box helicase	179	360	IPR011545	GO:0003676\|GO:0005524
	Stsc273579g00001	609	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	382	549	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc273579g00001	Stsc-Chr273579	3571	8193	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc273579g00001	153	542	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.472	8.85e-62	208

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc273579g00001	K11594		-	gmx:100795756	944.11