Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273560g00005 ATGCCTCCAACTCCGCAAGAATACGAGCAAAGCCTCTTACCGGGCTCACCGCAACAAGGCGATGATGAGTTCCAAGAAACGGCCTACGATTCCTCCGAGAAGATCGTGGTGGTAGGAGTCGACGAATCGGAGCACGACTCAGATAACTTGGACCGGGCCCCTCCGTTCTCATGGAGAAAGCTGTGGCTCTTCACGGGCCCGGGCTTCCTCATGAGCATAGCGTTCTTGGACCCAGGGAACCTGGAAGGAGACCTGCAGGCAGGTGCCATTGCGGGGTACTCGCTGCTGTGGCTGCTCATGTGGGCCACAGCTATGGGCCTTCTGATCCAACTGCTTTCGACCCGGCTCGGCGTGGCAACGGGCCGGCACCTCGCGGAGCATTGTAGGGAGGAGTACCCGCCGTGGGCCCGGAACGTGCTGTGGGTTATGGCTGAGTTGGCACTTATTGGTTCTGATATTCAGGAGGTTATTGGTAGTGCTATTGCTATAAGGATTCTTAGTAATGGTCTTTTGCCGCTTTGGGCTGGAGTCACCATAACTGCTCTTGATTGTTTTGTTTTTCTTCTTCTGGAGAATTATGGTGTGAGGAAACTGGAAGCTGTTTTTGCTGTTCTCATTGCAATAATGGCTCTTGCTTTTGCATGGATGTTTGGTGAAACAAAGCCCAATGGCAAGGAATTGCTTCTTGGTATTTTGATTCCAAAACTTAGCTCCAGAACTATACAGCAGGCTGTTGGAGTTGTGGGCTGCATTATCATGCCTCACAATGTGTTCTTGCACTCTGCTCTTGTTCAATCAAGGAGGGTTGATCACCGGAATAAAGGCCGAGTTCAAGAAGCTCTTAATTATTACTCAATAGAGTCCACCATGGCCCTTATTGTCTCCTTTGTTATTAACATATTTGTCACAACTGTCTTTGCTAAGGGGTTCTATGGTACTGAACTAGCAAACAACATTGGTCTTCTAAATGCAGGACAGTATCTTCAGGAGAAGTATGGGGGTGGATTATTTCCAATACTGTATATATGGGGTATTGGGTTATTAGCAGCAGGACAAAGTAGCACTCTTACGGGTACCTATGCAGGTCAATTTATCATGGGGGGTTTCCTAAATTTAAGGTTGAAAAAATGGATGAGAGCACTAATCACACGAAGCTTTGCGATTATCCCAACTATGATAGTTGCCCTTATTTTCGACACCTCCGAGCAATCATTAGATGAAATGAATGAGTGGCTTAATGTTCTTCAGTCAGTACAAATCCCCTTTGCACTTATTCCCTTGCTTTGTTTGGTGTCAAAGGAGCAGATAATGGGAAGTTTCAGAATTGGCCCCGTCCTCAAGATTATTTCATGGCTAGTGACTGCTCTGGTGATAGTGATCAACGGCTACCTTCTGCTGGAATTCTTCTCGCACGAAGTGAACGGTGCAATAGTCGGCACTGTAGTGTGCCTTACAACGGCTGCATATGTTGCATTCATAGTATACCTTATTTCACGGGCCATTACGTATTCACCTTGGCGAAGTGTAACCCAGCTTAAGTCAGTTACTAACTCAAGAGAGTTGAGTAATTAG 1572 0.4688 MPPTPQEYEQSLLPGSPQQGDDEFQETAYDSSEKIVVVGVDESEHDSDNLDRAPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSTRLGVATGRHLAEHCREEYPPWARNVLWVMAELALIGSDIQEVIGSAIAIRILSNGLLPLWAGVTITALDCFVFLLLENYGVRKLEAVFAVLIAIMALAFAWMFGETKPNGKELLLGILIPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRRVDHRNKGRVQEALNYYSIESTMALIVSFVINIFVTTVFAKGFYGTELANNIGLLNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTLTGTYAGQFIMGGFLNLRLKKWMRALITRSFAIIPTMIVALIFDTSEQSLDEMNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFRIGPVLKIISWLVTALVIVINGYLLLEFFSHEVNGAIVGTVVCLTTAAYVAFIVYLISRAITYSPWRSVTQLKSVTNSRELSN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273560g00005 523 PRINTS Natural resistance-associated macrophage protein signature 351 370 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc273560g00005 523 PRINTS Natural resistance-associated macrophage protein signature 379 396 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc273560g00005 523 PRINTS Natural resistance-associated macrophage protein signature 170 189 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc273560g00005 523 PRINTS Natural resistance-associated macrophage protein signature 195 216 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc273560g00005 523 PRINTS Natural resistance-associated macrophage protein signature 244 267 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc273560g00005 523 PRINTS Natural resistance-associated macrophage protein signature 140 166 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc273560g00005 523 PRINTS Natural resistance-associated macrophage protein signature 413 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc273560g00005 523 MobiDBLite consensus disorder prediction 1 26 - -
Stsc273560g00005 523 NCBIfam Nramp family divalent metal transporter 66 435 - -
Stsc273560g00005 523 MobiDBLite consensus disorder prediction 9 25 - -
Stsc273560g00005 523 Hamap Divalent metal cation transporter MntH [mntH]. 47 469 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc273560g00005 523 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 48 502 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc273560g00005 523 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 59 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc273560g00005 523 Pfam Natural resistance-associated macrophage protein 82 443 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273560g00005 Stsc-Chr273560 6817 10617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273560g00005 41 506 Inorganic Solute Cotransporters AT2G23150 80.810 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273560g00005 K21398 - gmx:100807811 858.981