Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273532g00002 ATGCGATACACGAGTTCCTTCTTAAGAAAAAAGTGGGTTGCATCAGGATTGATGGAGGTACACCTGCCGCATCAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGGTTTATCAAGGCAGCTGTGCTATCCATTAAGACTGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACTGTTATCTTTGCAGAACTATGCTGGACTCCAGGTGACCTAATTCAAGCCGAAGATCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATGCTACTTGCTGGCAAATGATACGGTTGACGACATCATATGA 312 0.4327 MRYTSSFLRKKWVASGLMEVHLPHQGNNWLQISRKRFIKAAVLSIKTGGVGLTLTAASTVIFAELCWTPGDLIQAEDRAHRIGQVSSVNICYLLANDTVDDII 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273532g00002 103 CDD SF2_C_SNF 38 94 - -
Stsc273532g00002 103 SMART helicmild6 11 83 IPR001650 -
Stsc273532g00002 103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 102 IPR027417 -
Stsc273532g00002 103 Gene3D - 29 103 IPR027417 -
Stsc273532g00002 103 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 36 103 - -
Stsc273532g00002 103 Pfam Helicase conserved C-terminal domain 41 83 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273532g00002 Stsc-Chr273532 6092 7870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273532g00002 37 103 RAD5 or RAD16-like Gene Family AT3G16600 41.791 3.37e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273532g00002 K14440 - aip:107635950 146.362