Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273500g00002 AACATGTTTGGTGCTGGAACAGAGACATCAGCAGTCACAATAGAATGGGCCTTATCCGAGTTAATAAACCACCCAGAAATTATCCTAAAAGCAAGAGAAGAAATTGATACAGTAATTGGCAAGAACAGATTGGTAGAGGAATCAGACATTCAAAACCTTCCCTATCTTCAATCCATAGTAAAAGAAACACTGAGGCTTCACCCAACTGGGCCCTTAATAGTGAGACAATCAACAGAAGATTGCAATGTTAATGGATACCATATTCCATCAAAAGCCACTGTGTTTGTGAATGTTTGGGCAATTGGAAGGGACCCAAGTTACTGGAAGGAGCCACATGAGTTCAAGCCAGAGAGGTTCATGAATGAAGAGGGAGAGAGTGTGTTGGATTTGAAGGGACAGAATTTTGAGTTGCTGTCATTTGGTGCTGGGAGGAGGAGTTGTCCTGGTGCTGCTTTGGCTTTGAATGTTATTCCTACTACATTGGCTGCTATGATTCAGTGCTTTGAATGGAAGGTTAGGGTTAATGGTGATGAAGATGGGAATTATAATATTGGAATTGTTGATATGGAGGAAAGGCCTGGAATGACACTTCCTAGGGCACATCCATTGTTGTGCATTCCTGTGGTTTGA 630 0.419 NMFGAGTETSAVTIEWALSELINHPEIILKAREEIDTVIGKNRLVEESDIQNLPYLQSIVKETLRLHPTGPLIVRQSTEDCNVNGYHIPSKATVFVNVWAIGRDPSYWKEPHEFKPERFMNEEGESVLDLKGQNFELLSFGAGRRSCPGAALALNVIPTTLAAMIQCFEWKVRVNGDEDGNYNIGIVDMEERPGMTLPRAHPLLCIPVV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273500g00002 209 FunFam Predicted protein 3 205 - -
Stsc273500g00002 209 Gene3D Cytochrome P450 1 197 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00002 209 Pfam Cytochrome P450 1 174 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00002 209 PRINTS P450 superfamily signature 5 22 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00002 209 PRINTS P450 superfamily signature 58 69 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00002 209 PRINTS P450 superfamily signature 147 158 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00002 209 PRINTS P450 superfamily signature 138 147 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00002 209 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 1 204 - -
Stsc273500g00002 209 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 140 149 IPR017972 GO:0005506|GO:0016705
Stsc273500g00002 209 SUPERFAMILY Cytochrome P450 2 207 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00002 209 PRINTS E-class P450 group I signature 14 40 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00002 209 PRINTS E-class P450 group I signature 57 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00002 209 PRINTS E-class P450 group I signature 137 147 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00002 209 PRINTS E-class P450 group I signature 147 170 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00002 209 PRINTS E-class P450 group I signature 97 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273500g00002 Stsc-Chr273500 12115 12867 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273500g00002 1 208 Cytochrome P450 AT5G06900 54.808 1.22e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273500g00002 K24188 - gmx:100807524 340.117