Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273500g00001 AATAATGGAGATGATGAACAAGCTCTAAAGGATTTGCTAGATATTTTGCTTGATATCTATGCTGATCAAAGTTCTGAGATTAGATTAACTAGAGAAAATATTAAAGCCTTCATTATGAACATGTTTGGTGCTGGAACAGAGACATCAGCAGTCACAATAGAATGGGCCTTATCAGAGTTAATAAACCACCCAAAAATTATGCTAAAAGTAAGAGAAGAAATTGATACAGTAATTGGCAAGAACAGGTTGGTAGAGGAATCAGACATTCAAAACCTTCCCTATCTTCAATCCATAGTAAAAGAAACACTGAGGCTTCACCCAACTGGGCCCTTAATAGTGAGACAATCAACAGAAGATTGCAATGTTAATGGATACCATATTCCATCAAAAGCCACTGTGTTTGTGAATGTTTGGGCAATTGGGAGGGACCCAAGTTACTGGAAGGAGCCACTTGAGTTCAAGCCAGAGAGGTTCATGAATGAAGAGGGAGAGAGTGTGTTGGATTTGAAGGGACAGAATTTTGAGTTGCTGTCATTTGGTGCTGGGAGGAGGAGTTGCCCTGGTGCTGCTTTGGCTTTGAATGTTGTTCCTACTACATTGGCTGCTATGATTCAATGCTTTGAATGGAAGGTTAGGGTTAATGGTGGAATTGTTGATATGGAGGAAAGGGCTGGAATGACACTTCCTAGGGCACATCCATTGTTGTGCATTCCTGTGGTTAGAATGTGTCCTTTTGTGTGA 741 0.4049 NNGDDEQALKDLLDILLDIYADQSSEIRLTRENIKAFIMNMFGAGTETSAVTIEWALSELINHPKIMLKVREEIDTVIGKNRLVEESDIQNLPYLQSIVKETLRLHPTGPLIVRQSTEDCNVNGYHIPSKATVFVNVWAIGRDPSYWKEPLEFKPERFMNEEGESVLDLKGQNFELLSFGAGRRSCPGAALALNVVPTTLAAMIQCFEWKVRVNGGIVDMEERAGMTLPRAHPLLCIPVVRMCPFV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273500g00001 246 SUPERFAMILY Cytochrome P450 7 241 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 PRINTS E-class P450 group I signature 53 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 PRINTS E-class P450 group I signature 33 50 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 PRINTS E-class P450 group I signature 176 186 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 PRINTS E-class P450 group I signature 96 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 PRINTS E-class P450 group I signature 136 160 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 PRINTS E-class P450 group I signature 186 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 FunFam Predicted protein 42 236 - -
Stsc273500g00001 246 Pfam Cytochrome P450 7 233 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 PRINTS P450 superfamily signature 44 61 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 PRINTS P450 superfamily signature 97 108 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 PRINTS P450 superfamily signature 186 197 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 PRINTS P450 superfamily signature 177 186 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273500g00001 246 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 179 188 IPR017972 GO:0005506|GO:0016705
Stsc273500g00001 246 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 10 235 - -
Stsc273500g00001 246 Gene3D Cytochrome P450 1 235 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273500g00001 Stsc-Chr273500 1 1969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273500g00001 10 241 Cytochrome P450 AT5G06900 57.759 2.62e-97 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273500g00001 K24188 - gmx:100807524 392.504