Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273487g00002 ATGCCTAATGGGAGCCTTGCTGATTTGATTCGCAGTAGCAAGAGAAGCTTGTTGGATTGGCCAATTAGGTACAGAATTGCCATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCACTATTGTGTTCCCCCTATTGTTCATAGGGAGGTCAAATCCCACAATATATTGCTTGATGAAGAGTTTGGAGCAAAAGTTGCAGATTTTGGTGTGGCCAAAACTGTTAGGAGGGTTAGCCAAGGTGCAGACTCTATGTCTGCAGTTGCCGGATCTTATGGTTACATAGCACCAGAATATGCTTACACTCTAAGAGCACCTTTCTCACATGCCAATGATGATAATCCAGAATATGAAGTAAGCCCCAAATGCAACCTTGATTATTCTTGTCCTGATGGTTTTCAAAGTTGA 405 0.4247 MPNGSLADLIRSSKRSLLDWPIRYRIAIDAAEGLSYLHHYCVPPIVHREVKSHNILLDEEFGAKVADFGVAKTVRRVSQGADSMSAVAGSYGYIAPEYAYTLRAPFSHANDDNPEYEVSPKCNLDYSCPDGFQS 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273487g00002 134 ProSiteProfiles Protein kinase domain profile. 1 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273487g00002 134 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 104 - -
Stsc273487g00002 134 SUPERFAMILY Protein kinase-like (PK-like) 1 103 IPR011009 -
Stsc273487g00002 134 Gene3D Transferase(Phosphotransferase) domain 1 1 111 - -
Stsc273487g00002 134 FunFam Os07g0541700 protein 1 90 - -
Stsc273487g00002 134 Pfam Protein kinase domain 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273487g00002 Stsc-Chr273487 9256 10206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273487g00002 1 103 Receptor kinase-like Gene Family AT1G28440 66.019 4.68e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc273487g00002 Pkinase 8.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273487g00002 - - aip:107613214 196.052