Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273476g00002 ATGGCCGATGAACCAATGCCCACTCGCTGGTCCTTCCAGGACTTCAAATTGAATTATGATGCAATGTTTGGGAGGAAGAAAGTGGTGGTGAATGGCGAGGCTGCTGATAAAGCTGTCGGTAATGGAGACTCGTTGAACCATGCATCCAACGGCAATCTGCATGTGAAAAGACCAGCTGAGATGACCATCTTTGAGCAGTTTCAGAGCCAGGGGCAGAATTCTGCACAGACAAATGGCTTTTCACCAAACCATGGGAATGAAATACCGCAAAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAGATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATAATTCGTGGGAATCCAAATGTGAAGTGGGAAAGCATCAAGGGGCTAGGGAATGCCAAAATTTTGCTAAAAGAGGCTGTTGTAATGCCTATTAAGTATCCCAAGTACTTTACTGGTCTGTTATCTCCATGGAAAGGCATTCTCCTCTTTGGCCCACCAGGGACAGGAAAGACAATGCTTGCAAAGGCGGTTGCAACTGAGTGCCAGACTACATTTTTTAATATTTCAGCATCATCTGTTGTCAGCAAATGGCGAGGTGATTCCGAGAAGTTGATAAAGGTGTTATTTGAGCTTGCAAGACACCATGCACCCTCAACAATATTTCTTGATGAAATTGACGCAATCATTAGTCAACGTGGTGAAGCACGTAGTGAACATGAAGCAAGTAGACGACTAAAAACTGAACTGCTCATACAGATGGACGGTTTGTCTAAGACTGATGATCTTGTTTTTGTTTTGGCGGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGTCTTGAAAAGCGAATTCTTGTACCACTCCCAGAACCAGAAGCAAGAAGATCCATGTTCGAGGAACTCCTTCCTCCACAGCCTGATGGAGAAGAGATCCCCTACGATTTGCTAGTGGAGCGGACGGAAGGATATTCTGGGTCAGATATCCGGTTACTCTGCAAAGAAACAGCAATGCAGCCTTTGAGACGCCTAATGTCTCAACTTGAACAGAGTCAAGAGTTGGTGCCGGAAGAAGAGTTGCCAAAAGTTGGGCCAATCAAATCTGAAGATATAGAAACAGCATTGAAAAACACAAGGCCATCTGCTCATCTGCATGCCCACAAATATGAAAAGTTTAATTCTGACTATGGCAGTCAAATACTTCATTGA 1212 0.4455 MADEPMPTRWSFQDFKLNYDAMFGRKKVVVNGEAADKAVGNGDSLNHASNGNLHVKRPAEMTIFEQFQSQGQNSAQTNGFSPNHGNEIPQKSLLPPFESAEMRTLAESLSRDIIRGNPNVKWESIKGLGNAKILLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECQTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLSKTDDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRSMFEELLPPQPDGEEIPYDLLVERTEGYSGSDIRLLCKETAMQPLRRLMSQLEQSQELVPEEELPKVGPIKSEDIETALKNTRPSAHLHAHKYEKFNSDYGSQILH 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273476g00002 403 SMART AAA_5 155 292 IPR003593 GO:0016887
Stsc273476g00002 403 Pfam ATPase family associated with various cellular activities (AAA) 159 289 IPR003959 GO:0005524|GO:0016887
Stsc273476g00002 403 CDD RecA-like_VPS4-like 125 288 - -
Stsc273476g00002 403 MobiDBLite consensus disorder prediction 71 88 - -
Stsc273476g00002 403 Pfam AAA+ lid domain 316 352 IPR041569 -
Stsc273476g00002 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 118 302 - -
Stsc273476g00002 403 FunFam Katanin p60 ATPase-containing subunit A-like 2 291 379 - -
Stsc273476g00002 403 PANTHER AAA DOMAIN-CONTAINING 70 399 - -
Stsc273476g00002 403 MobiDBLite consensus disorder prediction 71 90 - -
Stsc273476g00002 403 Gene3D - 291 379 - -
Stsc273476g00002 403 Gene3D - 118 394 IPR027417 -
Stsc273476g00002 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 387 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273476g00002 Stsc-Chr273476 7315 12690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273476g00002 153 362 Calmodulin-binding Proteins AT3G56690 37.089 1.56e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273476g00002 K07767 - gmx:100794098 681.019