Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273473g00002 ATGAATTCCATTGTTGAGGTTGGGCAATTGGATGATCATTTTGAAGATGTGAATTCCATTAATGAGGCTGGGCAATTGGAAGATCAAACAAAGTTTATGTGTAACGTTGATGAAGAATATGTTCCCAAGGTTGGGATGACATTTAAGTCATGTACAGAAGCTAGTGAATGCTACAAGGAGTATGCTAAACGAGCTGGATTTTCTTCCAAAATCCGAAATTCACAAAGGAATATAGTGACCGGTGCTATCAAGAATCAGCTCTTCACATGTAAGAGAGAGGGAAAAAGGAGATCTGACATCCCTGAGGCTGAAAAGACGAACCCCATGTCCCCGGCAATTTGTCTGGCAAGGATGTTTGTTCATATCGATAAGTTGATGCAGTGTTATGTTATTTCCAAAGTTCACTACTACATTTTACTCCTGTACCGACGGTTATTACCGACGGCTAAGGAGCACGGGATGTACCGACGGCTTAGCCGTCG 482 0.4212 MNSIVEVGQLDDHFEDVNSINEAGQLEDQTKFMCNVDEEYVPKVGMTFKSCTEASECYKEYAKRAGFSSKIRNSQRNIVTGAIKNQLFTCKREGKRRSDIPEAEKTNPMSPAICLARMFVHIDKLMQCYVISKVHYYILLLYRRLLPTAKEHGMYRRLSRR 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273473g00002 161 Pfam FAR1 DNA-binding domain 57 133 IPR004330 -
Stsc273473g00002 161 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 14 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273473g00002 Stsc-Chr273473 12616 13434 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc273473g00002 FAR1 1.6e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273473g00002 - K17604 aip:107614666 98.5969