Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273473g00001 ATGGGGGAGGTGGCAGTAATGCGCTCTGAACCACTTCAGTTTGAGTGCAATGATATGAAGCATCTGACAGAGGGAGACACCTATGCTACAGAAACAAATGCAGAGCTTGATCATGGGGAAGAATCAAGCCAGTCAACAAATAATGAAAAAACAAATGACTTGCTTGAGAAAGGATACATGGAATATGGATGTCAACATTACCGGAGAAGATGCCGTATCAGGGCCCCCTGTTGCAATGAGGTTTTTGATTGCCGCCACTGTCACAACGAAGCAAAAAATGATATCAGCATTGACCAGAAGCTTAGACATGACATTCCGCGCCACCAAGTCAAACAGGTGATATGTTCACTTTGTGGGACCGAACAAGAGGTTCAGCAGAACTGTATCAATTGTGGTGTTTGTATGGGCAAATACTTCTGTGGAACCTGCAAGCTTTTTGATGATGATGTATCGAAGCAACAGTATCATTGCAGTGGATGTGGAATTTGCAGAACTGGAGGACGTGAGAATTTCTTCCATTGCTATAAGTGTGGTTGCTGCTATTCGATCCTGCTGAAAGATAGTCACCCTTGCATTGAAGGAGCAATGCATCACGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCCAGAAATGATATCACTGTTATGCCCTGTGGACATACAATCCATAAGAGCTGCTTGAATGAAATGAGAGAACATTACCAATATTCATGCCCTTTGTGTTCAAAGTCGGTGTGTGATATGTCGAAGGTTTGGGAGAAATTAGACTTGGAGATTGCTGCTACACCAATGCCTGAACCATATCAGAATAAAATGGTTTGGATCTTGTGCAATGATTGTGGCAAAACATCTCGTGTTCAGTTCCATTTTGTGGCTCAAAAATGCTTGAACTGCAAATCCTACAACACACGACAGACCCGAGGCTGA 930 0.4269 MGEVAVMRSEPLQFECNDMKHLTEGDTYATETNAELDHGEESSQSTNNEKTNDLLEKGYMEYGCQHYRRRCRIRAPCCNEVFDCRHCHNEAKNDISIDQKLRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGRENFFHCYKCGCCYSILLKDSHPCIEGAMHHDCPVCFEYLFESRNDITVMPCGHTIHKSCLNEMREHYQYSCPLCSKSVCDMSKVWEKLDLEIAATPMPEPYQNKMVWILCNDCGKTSRVQFHFVAQKCLNCKSYNTRQTRG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273473g00001 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 40 308 - -
Stsc273473g00001 309 Gene3D - 271 309 - -
Stsc273473g00001 309 SMART ring_2 200 242 IPR001841 -
Stsc273473g00001 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Stsc273473g00001 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Stsc273473g00001 309 Pfam Ring finger domain 199 242 IPR001841 -
Stsc273473g00001 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Stsc273473g00001 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 245 IPR013083 -
Stsc273473g00001 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Stsc273473g00001 309 CDD RING-H2_Pirh2-like 199 243 - -
Stsc273473g00001 309 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Stsc273473g00001 309 SUPERFAMILY RING/U-box 198 246 - -
Stsc273473g00001 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Stsc273473g00001 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273473g00001 Stsc-Chr273473 2160 7845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273473g00001 62 309 C2H2 Transcription Factor Family AT3G18290 39.526 7.85e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273473g00001 K10144 - gmx:100803569 607.446