Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273446g00001 ATGGAGCCTTTGGAAGTGGATCAAATTGTGGACATTCCTGATACTCCAGATAGATTAGCTACTAGGCATGGTGATCAGAAACGTGTTCGGAATCCTGAAAAGAGGGAGAGGGGCTTCCCTGCTGCTGATGAATTGAAGAAATTCAGCAACTATATAGCACTTTCCCCATCAGAGACACGTCATCCTTCTTATAATGCCCCCATCTTTAGAAAAGCTGAAACTGAGAAAACTTTGGGACTTGGGACATCACACTCTACTGGTGCCGGAAAGATGGAGAGAGGGAAAACTGTGAGCTCTAGGTTTCCTGCTAAATCATCTCACCATGGACCAAGGTCTGTTTTAGATTTTACTGAAGAGAATGCACACTCCCAACAGCAGCTGAAACCAGCTTTCTCACATCGTGGATCAAGAGATAAGGCTGTTGAAGATATGAAAGAACTAAAAGCAAGGACTGGGAACACTTCATCACGAGTTGATGCTGATTCTTTTACTGCCTTCAGAACTAAAATGCTTCCAGGTCATAATATAACTCAGGAGCGTGGCAAGGGAATTGCACTACCTAATGATTCTCAACCTCAACTAAACACTGAAAAGCAACTGTCTTTGCCCCCTCAAATTTCCACCACACCAAGAGCTAGAGGGCAGAAGAGATTGGTACGGAATGGGTGTATTTCACCACATAATATTGCAAATAGGGCAGATCAAGCAGCTATAGAGGGTAATCACCAAACCAAGGAAGTTGAAAAAAGTCAAGTTGTGGATTTAGTTTCTAGCAATCCAATTTCTACGATTGATATTGAAGATATAGTTGCTGAAGAGAGAGGCAGTAATAGAGTGAAGGGAAAGCAAGTACTTATTCATCCTTCATCACATGTTCATAACACTGGAACTATTCAGATGGCTACCAGAAGCCCTGTGACTGATTTTGAGAAGGGCCATTCAGCCAGTAATGCCGTAAGGAATTTCCTTAACTACTCTGGGGGACAAGATGGTTGGAGAACTACACATACTCATAACAGCACTGATCAGCATCTTTATGATTTAGATTGGCATAATTTACGCAGAAGCCGTGATGTTGGAAAATTTATTGACAGACAAAATATGAACAGAATGGATAGAAGGAACACCCGCAGCGGTGAAAGCAACAAGGATGTACAAGATTCTTTATCTGATAATGCAGCTCAAGCAACTTCACTGACCATTCCAGAAGTAGATGAGTTGACTGTAACTCATCCTACCACAGGCACACTCACTAAAAGGCAAAAGAAACGTGGATCAACTTCAGGAAATCGTGATGAAGCATATTTGAAATCAAATATGATATTCCTATGTTCATCTGGGGAATCATCAAGCTCTTCTCGTAGCCCTGTCTTGAATTCTGATGTGGTAGACTTGTCACTAGAACCTAGTTATACCAACAGATACACTGAAGTCTTAGATGACAATGACAATAGTAACTCAGAAGCTCGAGCTAGGCAAGTAGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTATATCATGATGATATTGTTGAAGGGAGAGGGCATATTGATGAACATTTAGCTTGGGCACTGCAGCAAGAGGAAAATCTTAATCATACTTCTATTGATAACCACCAAACATCAAATCCTATAAGGTTTCCAAGGTCGACAAATAGTCAGCCTCGTTCACGGTCCCATCAAAATCAAAATCCTTCTAATAGGAGGAGAGCTCCACCTCAAGTTCCTTCCTCTAATAGAATGTCACAGTTGAGGTCACAGTTGAGGAGTCACATTGCAAATCGTTCCCGAACACCTAACATATCATACAGAGGCAGAGGAAGGCGCCCCCGGTTTCCCGTGGATATGGACTTAAACCTGAGACTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATTTTGCAGATTTAGGGATGGGTAATGACATGTTTCTTGCTCAACAAGATTTCAATGAACTTGATTATGAAATGTTGTTGGCCCTTGATGAGCAAAACCACCGACATACTGGTGCATCCTCAAATCAGATCAATAGTTTGCCAGAGTCCACCATCCAGAACGACAACTTCACAGAGGCATGTGCTATATGCCTTGAGACCCCGGGCAAGGGTGAAATTATTCGCCATCTTCCCTGTTTGCACAAATTCCATAAAGATTGTATTGATCCTTGGCTCCATAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA 2229 0.4217 MEPLEVDQIVDIPDTPDRLATRHGDQKRVRNPEKRERGFPAADELKKFSNYIALSPSETRHPSYNAPIFRKAETEKTLGLGTSHSTGAGKMERGKTVSSRFPAKSSHHGPRSVLDFTEENAHSQQQLKPAFSHRGSRDKAVEDMKELKARTGNTSSRVDADSFTAFRTKMLPGHNITQERGKGIALPNDSQPQLNTEKQLSLPPQISTTPRARGQKRLVRNGCISPHNIANRADQAAIEGNHQTKEVEKSQVVDLVSSNPISTIDIEDIVAEERGSNRVKGKQVLIHPSSHVHNTGTIQMATRSPVTDFEKGHSASNAVRNFLNYSGGQDGWRTTHTHNSTDQHLYDLDWHNLRRSRDVGKFIDRQNMNRMDRRNTRSGESNKDVQDSLSDNAAQATSLTIPEVDELTVTHPTTGTLTKRQKKRGSTSGNRDEAYLKSNMIFLCSSGESSSSSRSPVLNSDVVDLSLEPSYTNRYTEVLDDNDNSNSEARARQVEADERLARELQEQLYHDDIVEGRGHIDEHLAWALQQEENLNHTSIDNHQTSNPIRFPRSTNSQPRSRSHQNQNPSNRRRAPPQVPSSNRMSQLRSQLRSHIANRSRTPNISYRGRGRRPRFPVDMDLNLRLDILEALEDAVGDFADLGMGNDMFLAQQDFNELDYEMLLALDEQNHRHTGASSNQINSLPESTIQNDNFTEACAICLETPGKGEIIRHLPCLHKFHKDCIDPWLHRKTSCPVCKSSIT 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273446g00001 742 MobiDBLite consensus disorder prediction 1 42 - -
Stsc273446g00001 742 MobiDBLite consensus disorder prediction 361 381 - -
Stsc273446g00001 742 SMART ring_2 697 737 IPR001841 -
Stsc273446g00001 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 742 IPR013083 -
Stsc273446g00001 742 Pfam Ring finger domain 696 738 IPR001841 -
Stsc273446g00001 742 CDD RING-H2_PA-TM-RING 697 738 - -
Stsc273446g00001 742 SUPERFAMILY RING/U-box 696 741 - -
Stsc273446g00001 742 MobiDBLite consensus disorder prediction 474 494 - -
Stsc273446g00001 742 MobiDBLite consensus disorder prediction 538 610 - -
Stsc273446g00001 742 MobiDBLite consensus disorder prediction 76 110 - -
Stsc273446g00001 742 MobiDBLite consensus disorder prediction 382 423 - -
Stsc273446g00001 742 MobiDBLite consensus disorder prediction 192 214 - -
Stsc273446g00001 742 MobiDBLite consensus disorder prediction 361 431 - -
Stsc273446g00001 742 FunFam RING/U-box superfamily protein 662 742 - -
Stsc273446g00001 742 ProSiteProfiles Zinc finger RING-type profile. 697 738 IPR001841 -
Stsc273446g00001 742 MobiDBLite consensus disorder prediction 16 42 - -
Stsc273446g00001 742 PANTHER SI:CH211-59O9.10 360 742 - -
Stsc273446g00001 742 MobiDBLite consensus disorder prediction 538 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273446g00001 Stsc-Chr273446 2717 10892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273446g00001 1 742 C3H Transcription Factor Family AT1G04790 32.776 1.81e-84 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273446g00001 - - aprc:113872307 830.091