Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273421g00001 AATTCTATGCCTTTCTGCAACTGTTTGACTGGCTATGAGCAAAGTAATTCATCTGATTGGAACCTTGAGGATTACTCAGGTGGATGCAAGAGAAGAGCAAAGTTCCAATGCGAGGCGGATGATCTTTCTAGTGGTGCTATGGACAAGTTCATGGCATTTCCAAACATGGCATTACCTTCGCTTCCACAAACAGTAAGTGCTGTGGATGCAGAAGAATGCGCTTCAACTTGCTTAAAGAACTGTTCTTGCACAGCATATGCATATGACAGTAAAGGTTGTTTAATTTGGAATGATGACCTCTTGCATGTGAAGCAGCTTACTCAAGATGATAGTAATCGAGAGACCTTGTTTCTCAAGCTAGCAGCATCTGAATTTCCGGATTCTAAGAGCAACAAGAGGAGAACCATTGGTGCTGTTGCGGGTGCTGTTGGTGGCATGGTGATTGTCCTAGCAGTTGTTCTATTTGTCTTGTTGAGGAGAAGGAAACAAGTTCAATCAGGAACATTGGTTGAAGGCTCATTGAAGACATTTGGGTACAGAGATTTGCAAATTGCAACAATGAACTTCTCAGATAGATTGGGAGGAGCAAGTTTTGGTTCTGTCTTTAAGGGGAGACTGCCAGATTCAAGTGTCATAGCAGTGAAGAAGCTCGAAAACATTAGCCAAAGCGAGAAACAGTTTCGGACAGAAGTGAGCACAATTGGGACAGTCCAGCATATCAATCTAGTTAGGCTCCGCGGCTTCTGTTCTGAAGGTACTAGAAAACTTCTGGTCTATGATTACATGCCAAATGGATCCTTGGATTCAATCTTGTTCCATGAGAAGCGCTCCATGTCCAAGGTGTTGGAATGGAAAGAAAGGTACCAAATTGCTCTTGGGACAGCTAGGGGACTGTCTTATCTCCATGAGAAGTGTAGAGACTGCATCATACACTGTGATGTGAAGCCGGAAAACATTCTTTTAGATGCTGATTTTTGTCCAAAAGTGGTACATTTTGGCCTTGCAAAGCTGGTTGGAAGGGACATTGGCCAGGTCCTCACAACCATGAGAGGAACAAGGGGATATCTTGCTCCGGAATGGAATTCAGGGGTGCCTATAACTGCCAAAGCCAATGTCTATAGCTACGGAATGATGCTGTTTGAGTTTGTTTCTGGTAGGAGAAACTCAGATCCACCAGAAGATGGACAATCTAGGTTCTTCCCTACGTGGGCTGCAAACACAGCGAGTGAAGGCGGAAATGTGCTTAGCCTTTTGGATCCAAAGTTGAAGGGAAATGCTAACATCGAAGAGGTCATTCAAGTCATCAAAATCGCTTCTTGGTGTGTCCAAGATGATGAGACTAATAGGCCAACCATGAATCAGGTTGTTTACATTCTTGATGGTGTGTTGGATGTGGATTTTCCTCCAGTGCCAATATTCCTACAAGCCTTTCTTGAGAACCATGAAACTTCAGTTTTCTTCATTGACTCAGGCTCTACATAG 1482 0.4359 NSMPFCNCLTGYEQSNSSDWNLEDYSGGCKRRAKFQCEADDLSSGAMDKFMAFPNMALPSLPQTVSAVDAEECASTCLKNCSCTAYAYDSKGCLIWNDDLLHVKQLTQDDSNRETLFLKLAASEFPDSKSNKRRTIGAVAGAVGGMVIVLAVVLFVLLRRRKQVQSGTLVEGSLKTFGYRDLQIATMNFSDRLGGASFGSVFKGRLPDSSVIAVKKLENISQSEKQFRTEVSTIGTVQHINLVRLRGFCSEGTRKLLVYDYMPNGSLDSILFHEKRSMSKVLEWKERYQIALGTARGLSYLHEKCRDCIIHCDVKPENILLDADFCPKVVHFGLAKLVGRDIGQVLTTMRGTRGYLAPEWNSGVPITAKANVYSYGMMLFEFVSGRRNSDPPEDGQSRFFPTWAANTASEGGNVLSLLDPKLKGNANIEEVIQVIKIASWCVQDDETNRPTMNQVVYILDGVLDVDFPPVPIFLQAFLENHETSVFFIDSGST 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273421g00001 493 SUPERFAMILY Hairpin loop containing domain-like 46 108 - -
Stsc273421g00001 493 SMART ntp_6 45 120 IPR003609 -
Stsc273421g00001 493 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 262 469 - -
Stsc273421g00001 493 Pfam Protein kinase domain 190 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273421g00001 493 FunFam Receptor-like protein kinase 4 155 261 - -
Stsc273421g00001 493 ProSiteProfiles Protein kinase domain profile. 187 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273421g00001 493 Gene3D Transferase(Phosphotransferase) domain 1 262 466 - -
Stsc273421g00001 493 CDD STKc_IRAK 193 461 - -
Stsc273421g00001 493 ProSiteProfiles PAN/Apple domain profile. 37 121 IPR003609 -
Stsc273421g00001 493 SMART serkin_6 187 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273421g00001 493 SUPERFAMILY Protein kinase-like (PK-like) 174 483 IPR011009 -
Stsc273421g00001 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Stsc273421g00001 493 Gene3D Phosphorylase Kinase; domain 1 153 261 - -
Stsc273421g00001 493 CDD PAN_AP_plant 36 121 - -
Stsc273421g00001 493 PANTHER OS07G0415500 PROTEIN 4 473 - -
Stsc273421g00001 493 Pfam PAN-like domain 46 102 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273421g00001 Stsc-Chr273421 29 1510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273421g00001 134 469 Receptor kinase-like Gene Family AT5G20050 37.838 4.09e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc273421g00001 Pkinase 6.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273421g00001 - - pvu:PHAVU_011G109100g 706.057