Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273392g00002 ATGGCAAAGGTAAGGGAGAAGTTATACGTTACTGTTCCGAATTTATTCCGATGCCCAATTTCGATGGATGTGATGAGGTCTCCCGTAAGTCTGTGTACCGGCGTCACGTACGATCGATCCAGCATCCAGCGCTGGCTCGAATCAGGTCATGACACGTGTCCTGCCACCATGCAGGTCCTCCCTTCCAAGGACTTCATCCCAAACCTCACACTCCACCGCCTCATCCGCCTGTGGCTCATCTCAGCTGCCGGCGAACCATCCTCGCCCTCCGAATCACGGATCTCCGCCGCAAGCGATCGCCTCCGTGCTCTTCTCACCGGAATCCAAACCGACGCTGAGGATTTCGCTGCTTCGCTCTCTGAGCTCGCCGAATTTTCCAGATTCTCAGCCGACAACCGCCGTGTCCTCGTGAGCTTCCCTGGATTCGATTCCGCCATAGCTCGAGCTCTGGCTGGAAGCAGGTCGCGGATTGAAGCTTTGGAAAACGTGATCGCGGTTCTGGATTTGGTTCTCCGGGAGAACGGGAATTCAGATTCCGGAGCCGGAGAGAGGATCCGGCGGTCTATCCTCGATACTCGCGAAGATTGCTTAGCAGCGATAGCTTTTGCAATTGAGAATGGATCTGCGAAATTGAAGGTCGCATCGGTTAGAGTTTTGGAGTTTCTCGCCGGAGACTTTCAATCGAAGCGGTGGATCGCGGAAACGCGAGGCTTATTGTCACAGCTCGTGAAGCTTCTGAACGACGGAACTGAGGAACTAAACGGCGCCGTTTTGTCGCTGTTGGCTTCGGTTTCGGTGACACAGTCGGCGAAAGCCGAGCTCGTCCGTTTGGAAATCATCAAGGCGGTTTCGAAGACGCTGCAGAGCGCCGCCTGCAGCGGTTCCATGGCGGAGAAGTGCCTGAGAGTGCTGGCGGTTGTGGTCACGTGCGCTGATGGTAGGGCAGCGATGGGCGGAGATCTTTCGTGTGCGGCGGCAGTGGTGGAGAGACTGGCGAAGGCAGGGAAGGCGGCGACGGAGGACGCCATGGCGGTGCTGTGGAGTCTGTGCTGCCTTTGCGGCAACGAAAAGGTGAGGGATGAGGTGGCGAAGCGAAACGGCGTCGCAGTGGTGCTTTTGGTTATGCAGAGAGGATGTGAGGGTCACGTGAGGAGCATGTGCGTGGATTTGATTAAGGTTCTTAGGAAAAACGGGTTGCCCTTGGCACTTGGATTAAGCTATGACACCAAAACTACTCATATTAAGCCTTGCTAA 1254 0.5566 MAKVREKLYVTVPNLFRCPISMDVMRSPVSLCTGVTYDRSSIQRWLESGHDTCPATMQVLPSKDFIPNLTLHRLIRLWLISAAGEPSSPSESRISAASDRLRALLTGIQTDAEDFAASLSELAEFSRFSADNRRVLVSFPGFDSAIARALAGSRSRIEALENVIAVLDLVLRENGNSDSGAGERIRRSILDTREDCLAAIAFAIENGSAKLKVASVRVLEFLAGDFQSKRWIAETRGLLSQLVKLLNDGTEELNGAVLSLLASVSVTQSAKAELVRLEIIKAVSKTLQSAACSGSMAEKCLRVLAVVVTCADGRAAMGGDLSCAAAVVERLAKAGKAATEDAMAVLWSLCCLCGNEKVRDEVAKRNGVAVVLLVMQRGCEGHVRSMCVDLIKVLRKNGLPLALGLSYDTKTTHIKPC 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273392g00002 417 SUPERFAMILY RING/U-box 8 80 - -
Stsc273392g00002 417 PANTHER WDSAM1 PROTEIN 11 397 IPR045185 GO:0061630
Stsc273392g00002 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 88 IPR013083 -
Stsc273392g00002 417 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Stsc273392g00002 417 SUPERFAMILY ARM repeat 206 397 IPR016024 -
Stsc273392g00002 417 FunFam RING-type E3 ubiquitin transferase 12 83 - -
Stsc273392g00002 417 CDD RING-Ubox_PUB 13 65 IPR045210 -
Stsc273392g00002 417 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Stsc273392g00002 417 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Stsc273392g00002 417 Gene3D - 89 414 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273392g00002 Stsc-Chr273392 9166 10419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273392g00002 6 416 U-box Gene Family AT5G09800 38.679 1.29e-85 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273392g00002 - - adu:107491069 741.11