Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273389g00002 ATGGCTCTGCATTCTCCTTTCTCCTCTTCTTCTTCCATCAACTATGCATGGAAATATGACGTTTTCATTAGCTTTAGGGGCCAAGATACTCGCTACGGTTTTACCGGCAACCTCTACAAAGCTCTTTGTGATAAAGGAATCCATGCTTTCATTGATGATGAGGAGCTTCAAACCGGAGACGAAATCACACCCTCACTACTCCAAGCAATTCAACAGTCCAGGATAGCTGTCATTGTGCTCTCTCCTAACTATGCTTCTTCCACTTTTTGCTTAGATGAACTTGTCAATATCCTTGACTTCATCAAGGGAAATAATCGGTTGGTTTTGCCGGTTTTCTATGATGTGGATCCTTCTGATGTGCGCCATCAAAGAAACAGTTTTGGAGAAGCAATGATAGAGCATGAGAAGAGATTCAAGAATGACATGAACAAGGTGCAAAAATGGAAAGAAGCTCTGCAACAAGTTTCTAATTTGTCAGGCTATCATTTCAAATACGGGGACGGATATGAATACATGTTTATCGGAAACATGGTCGAAAACATCTCAAAAAAGATTAGAAGACAAGTACCTTTGCCTGTTGCTGATCATCTAGTTGGATTGGAGTCTCCAGTGTCAAAGATATCTTCGCTTCTAGATGTTGAATCAAATGCTGGGGTTCACATGGTAGGTATTCATGGAATAGGAGGAATTGGTAAAACAACTCTTGCTCTTACAGTTTATAACTTGATTGCAGACAATTTTGAAAGTTCGTGCTTTCTTGAAAATGTGAGAGAAAATTCGAATAGATACGGTTTAGTACATCTTCAAACTATTCTTCTTTATGAGACATTAGGAGAGAAGGATATTAAGCTAACAAGTACTAAGCAAGGAACTTCTGAGATACAGAAGAGGTTATGTCGAAAGAAAGTTCTTTTGGTTCTTGATGATGTTGATGAGAAGGAGCAGTTAAAAGCTATAGCTGGAAAACCTAATTGGTTTGGTCCTGGAAGCAGAGTCATTATTACAACGCGGGACAAACATCTGCTAATACTTTATGGTGTTGAAAGGACATACGAGGTACAAGGTTTAAGTAAAAATGAGTCCTTCAGTTTGCTTACTTGGAAAGCTTTTAAAGCTGATACTGTTAGCCCAAGGTATGCGAGTGCTTTAACTTGTGCCGTAAGATATGCTTCTGGGCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACTTGTTCGGAAAAGATTTAGAACAATGGGAATCTGCATTGGATCAATATGAAAAGATTCTTGATAATAAAATACGTAAGATACTTCAGGTAAGTTTTGATGCTTTGGGGAAAGAAGTACAAAGTGTCTTTCTGGATATTGCTTGTTGTTTTAAAGGATATACACTAATGGAAGTAACAAACATACTTCAAGCTCATTATGGGAGTTGCATGAGATATCATGTTGGAGTGTTGGTTGAAAAATCTCTCATAAAAATTGAAGAGAATGGTAAAGTGATGATACATGATTTGATAGAGGATATGGGCAAAGCAATTGTTTTAGAAGAATCACCTGAAATACCTGGAAAGCGTAGTAGATTATGGTTTTATGAAGATATACTCAAAGTTTTAGAGAACAATCAAAAGTTGGTGAGCTTGAAAGTTTTGAATTTTGACGACAGTGATTCGTTGAAAGAGATTCCTGATGTGTCTAATCTTCAAACTTTACAAGAATTTTCGTTCAGAAGATGTAGAAATTTAGTTACAGTTCATAGTTCAGTTGGTTTTCTACCTAACCTTAAAATATTGAATGCTGAAGATTGCCTTAAGCTAAAGAATTTTCCACCTGCTATTCATTTACCCTCACTGGAAGATCTCGGTCTATCTGGTTGCTCAAGCCTTGAGAATTTTCCAGAAATACCAGAAGAGATGGAAAATGTAGGGTTGCTTGATTTAGAAGGCACAGGCATAAGAGATTTGCCATGTTCATTTCGTAATCTTTCTGGTTTGTGGTATCTGAAAATGAGTAGGAATAAGAAAATGTGTAAGATACCGAGTGTGATCGGCATGATGCCACAACTGTCTTCTTGCCATATTTGGGGAAGTGGCAATAAGGGGAGGGTATCAGCAAAGCAAGAGGAGGGGCTACAAGGAATATTGACCCATTCCCTCCCTTCTTCTAATGTGCAACATCTTTATCTCACCAACTGGAAGCTTTCAGATGACTTTTTTCCACTAGCTCTTGCATGGTTTCCCAATGTGAAATGCTTGGACCTAAGAGGCAATGATTTCACAGTCCTTCCGGAATGCATCCAACAATTCCGCTTTCTATGGTGGCTCAATGTCGATGATTGCGAGCATCTTCGGGAGATTAAAGGGATTCCGCCGTCCTTAAAAGACTTCGCAGCAATAAACTGCAAATCACTGAGTCCCAGGGGTGCAAGCATGCTAGTCAATCAGAAACTGCATGAGAATGGAGGCATGGCGTTTGCATTGCCAGGAAGGAGGATTCCGAGGTGGTTTGAGCAGCACAAAAGGGGAGAATCAATCTCTTTCTGGTTTCGTGGCAACTACTTCCCTTTTAAAGGTCTTTGCCTTGCAATTCTACTCAAGGATGACCTCCCTTTCCCTGTTTGGATAAGGCCCATAGTTACCATCAATGGCAACCAAGTTTCCCGGGGCAGGGAAATCAAGATGGATCAGTTATTTATTTTTGATCTGTCAATTACAAATTGTTATGGTTATGATGATGAAACACTGAGTTTTGAGGATGAATGGAATCATGCAGAGGTTTCATATGAAGCACGTGACAATGTCTACAGAGTGGTTCCAACTGAGTCAATTGCGAAAGAGATTGGAATGCACATATTGAAGCAAGAGAGCTGTATCATGCAAGATATTCGATTCACTGATCCTTATGAAAAGATAAAGCTGATTATAATGATGCTCTCAATAGTATATCACAAGCATAATTCATTGCTCATGAAAACATGCATAGATTTCTGGACACTGCTTTTTCTAACTCACACACTTTTAGGCACCAACACTCTCTGA 3018 0.3907 MALHSPFSSSSSINYAWKYDVFISFRGQDTRYGFTGNLYKALCDKGIHAFIDDEELQTGDEITPSLLQAIQQSRIAVIVLSPNYASSTFCLDELVNILDFIKGNNRLVLPVFYDVDPSDVRHQRNSFGEAMIEHEKRFKNDMNKVQKWKEALQQVSNLSGYHFKYGDGYEYMFIGNMVENISKKIRRQVPLPVADHLVGLESPVSKISSLLDVESNAGVHMVGIHGIGGIGKTTLALTVYNLIADNFESSCFLENVRENSNRYGLVHLQTILLYETLGEKDIKLTSTKQGTSEIQKRLCRKKVLLVLDDVDEKEQLKAIAGKPNWFGPGSRVIITTRDKHLLILYGVERTYEVQGLSKNESFSLLTWKAFKADTVSPRYASALTCAVRYASGLPLALEVIGSNLFGKDLEQWESALDQYEKILDNKIRKILQVSFDALGKEVQSVFLDIACCFKGYTLMEVTNILQAHYGSCMRYHVGVLVEKSLIKIEENGKVMIHDLIEDMGKAIVLEESPEIPGKRSRLWFYEDILKVLENNQKLVSLKVLNFDDSDSLKEIPDVSNLQTLQEFSFRRCRNLVTVHSSVGFLPNLKILNAEDCLKLKNFPPAIHLPSLEDLGLSGCSSLENFPEIPEEMENVGLLDLEGTGIRDLPCSFRNLSGLWYLKMSRNKKMCKIPSVIGMMPQLSSCHIWGSGNKGRVSAKQEEGLQGILTHSLPSSNVQHLYLTNWKLSDDFFPLALAWFPNVKCLDLRGNDFTVLPECIQQFRFLWWLNVDDCEHLREIKGIPPSLKDFAAINCKSLSPRGASMLVNQKLHENGGMAFALPGRRIPRWFEQHKRGESISFWFRGNYFPFKGLCLAILLKDDLPFPVWIRPIVTINGNQVSRGREIKMDQLFIFDLSITNCYGYDDETLSFEDEWNHAEVSYEARDNVYRVVPTESIAKEIGMHILKQESCIMQDIRFTDPYEKIKLIIMMLSIVYHKHNSLLMKTCIDFWTLLFLTHTLLGTNTL 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273389g00002 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 449 IPR027417 -
Stsc273389g00002 1005 PRINTS Disease resistance protein signature 606 622 - -
Stsc273389g00002 1005 PRINTS Disease resistance protein signature 390 404 - -
Stsc273389g00002 1005 PRINTS Disease resistance protein signature 221 236 - -
Stsc273389g00002 1005 PRINTS Disease resistance protein signature 297 311 - -
Stsc273389g00002 1005 ProSiteProfiles TIR domain profile. 17 189 IPR000157 GO:0007165
Stsc273389g00002 1005 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 787 IPR044974 GO:0006952
Stsc273389g00002 1005 SUPERFAMILY L domain-like 523 798 - -
Stsc273389g00002 1005 Gene3D Ribonuclease Inhibitor 633 811 IPR032675 -
Stsc273389g00002 1005 Gene3D Ribonuclease Inhibitor 521 632 IPR032675 -
Stsc273389g00002 1005 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 187 - -
Stsc273389g00002 1005 Pfam NB-ARC domain 201 437 IPR002182 GO:0043531
Stsc273389g00002 1005 Gene3D - 12 182 IPR035897 -
Stsc273389g00002 1005 Gene3D - 183 345 IPR027417 -
Stsc273389g00002 1005 SMART till_3 18 158 IPR000157 GO:0007165
Stsc273389g00002 1005 Pfam TIR domain 18 184 IPR000157 GO:0007165
Stsc273389g00002 1005 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 161 IPR035897 -
Stsc273389g00002 1005 Coils Coil 409 429 - -
Stsc273389g00002 1005 Gene3D - 355 439 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273389g00002 Stsc-Chr273389 4941 8878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273389g00002 7 547 WRKY Transcription Factor Family AT4G12020 28.519 1.99e-46 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273389g00002 - - ahf:112751488 1219.91