Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273389g00001 ATGGCTCTGCAATCCTCCTTCTCCTCCTCCTCTGCCCATCCTTTTTCCTCTTCTTCTATCAGATATAAATGGAAATATGATGTGTTTATTAGTTTTAGAGGCCAAGATACTCGCTTAGGTTTCACTGGCAATCTCTACAGTGCACTCCATAACAAAGGAATCCACACCTTCTTTGATGATGACAAGCTTCAAAGTGGAGAGGAGATCACACCTGCACTGCTCAAGGCTATTGAAGAGTCCAGGATTGCCATCATTGTGCTCTCTCCTAACTATGCTTATTCTTCTTTTTGCTTAAAGGAACTAGTCCATATCCTTGACTGCATTAAGGGAAACAGTCGCTTGGTTTTGCCCATTTTCTATGAGGTGGATCCTTCTGATGTGCGCCATCTAAAAGAGAGTTTTGGAGAGGCAATGGCTAAGCATGAGAAAAGATACAACAAGGTGGACAAATGGAAGAAGGCTCTCCATCAATTAGCTAATTTCTCCGGTTATCATTTCAAACATGGGGAAGGATATGAACATAAGTTTATTGAAAAGATTGTGCAAGACATTTCAAGAAAGATAAGCCGTGTACCTTTGCCTGTGGCTGACTACCCTGTTGGACTTGAGTCTCATGTGCCACAAGTAATTTCACTTTTGGAAATGGATTCTACTAATCGAGTTCATATGGTAGGGATACATGGAATCGGTGGCATAGGTAAAACAACACTTTCTCTTGCAATTTATAACTTCATTGCTGACAATTTCGAAGCTGTGTGCTTTCTTGAAAACGTGAGAGAAAACTCACAAAAGCATGGGTTGATGCATCTTCAAAAGGATCTTCTTTGTAAGATATTAGGGAAGGAGGGAGTCCACATAATAGGTGTTAATGAAGGAACTTCACAGATACAACGTAGACTCTGCCAAATGAAGGTTCTTTTGGTTCTGGATGATGTTGATGATTACAAGCAGCTAGAGGCTATTGCTGGAAAACCTGATTGGTTCGGTGGCGGTAGCAGAGTCATAATTACAACACGAGACACGCATTTGCTAAAACTCCATGGTGTTGAAAGGACATATTGCATCGAAGGTTTAAATAGGAAAGAGTCCTTTAAGTTGCTTATTTGGAAATCTTTTAAAACTAATACTGTTAGCCCACCAAGTTATGCAGATGTTTTAAATCGTGCAATAACTTATGCCTCTGGACATCCACTGGCTTTGGAATTAATAGGCTCCAACTTGTTTCGAAAAGAAGTACAAGTTTGGGAATCTGCATTGGATCAATTTGAAAAACATCTTGATCATAAAATACATAACATACTTCGAATAAGTTTTGATGCTCTGGGAGAACAAGAGCAAAGTGTTTTTCTTGATATTGCCTGTTGTTTTAAAGGATATACATCAAAGGAAATTAGTGATCTACTTCAAGCTCACTATGGGCGTTCCATGGAATATCATATTAGAGTGTTGCATGACAAATCTCTCATAAAGATTTGTCAAGGTCATAAGGTGACAATGCATGACTTGATAGAGGACATGGGCAAAGAAATTGATGATCTGGAAAAATCAGCAGAAATGCCTGGAAAACGTAGACGATTATGGTTCTATAAAGACGTAG 1597 0.3914 MALQSSFSSSSAHPFSSSSIRYKWKYDVFISFRGQDTRLGFTGNLYSALHNKGIHTFFDDDKLQSGEEITPALLKAIEESRIAIIVLSPNYAYSSFCLKELVHILDCIKGNSRLVLPIFYEVDPSDVRHLKESFGEAMAKHEKRYNKVDKWKKALHQLANFSGYHFKHGEGYEHKFIEKIVQDISRKISRVPLPVADYPVGLESHVPQVISLLEMDSTNRVHMVGIHGIGGIGKTTLSLAIYNFIADNFEAVCFLENVRENSQKHGLMHLQKDLLCKILGKEGVHIIGVNEGTSQIQRRLCQMKVLLVLDDVDDYKQLEAIAGKPDWFGGGSRVIITTRDTHLLKLHGVERTYCIEGLNRKESFKLLIWKSFKTNTVSPPSYADVLNRAITYASGHPLALELIGSNLFRKEVQVWESALDQFEKHLDHKIHNILRISFDALGEQEQSVFLDIACCFKGYTSKEISDLLQAHYGRSMEYHIRVLHDKSLIKICQGHKVTMHDLIEDMGKEIDDLEKSAEMPGKRRRLWFYKDV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273389g00001 532 Pfam TIR domain 25 188 IPR000157 GO:0007165
Stsc273389g00001 532 Gene3D - 20 189 IPR035897 -
Stsc273389g00001 532 SMART till_3 25 161 IPR000157 GO:0007165
Stsc273389g00001 532 ProSiteProfiles TIR domain profile. 24 188 IPR000157 GO:0007165
Stsc273389g00001 532 Gene3D - 357 442 IPR042197 -
Stsc273389g00001 532 Gene3D - 190 352 IPR027417 -
Stsc273389g00001 532 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 531 IPR044974 GO:0006952
Stsc273389g00001 532 PRINTS Disease resistance protein signature 223 238 - -
Stsc273389g00001 532 PRINTS Disease resistance protein signature 393 407 - -
Stsc273389g00001 532 PRINTS Disease resistance protein signature 299 313 - -
Stsc273389g00001 532 Pfam NB-ARC domain 203 431 IPR002182 GO:0043531
Stsc273389g00001 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 452 IPR027417 -
Stsc273389g00001 532 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 164 IPR035897 -
Stsc273389g00001 532 FunFam Disease resistance protein (TIR-NBS-LRR class) 22 190 - -
Stsc273389g00001 532 SUPERFAMILY "Winged helix" DNA-binding domain 429 532 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273389g00001 Stsc-Chr273389 1551 3284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273389g00001 15 527 WRKY Transcription Factor Family AT4G12020 28.627 1.48e-46 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273389g00001 - - aip:110272157 747.658