Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273380g00002 ATGGTTGAACGAAAGCAATTCAAGACAAGGTTATGTGTTCCTTATCAGAGAGGACGCTGCACGCGCCATAATTGCAACTTTGCACATGGCAATGCTGAGTTGCGAAGGTTCTCTGCCTTGCATACCGGTAGGAAAGACAATGACTTGAGGGATACACTGGACAGAAGGTATTTATCACCTCGAAGGTACTCACCTGCTCGAGATGGAAGAGGCCACCAGGCAATTCATGAACACAGTCCGTCAAGGTCCATGGAGAAGAAAAGTGACAGAAGACACTGGAGAAAACAGGGCACTGCTGGCCAGAGTGATATTTCTGCAAGCTTGAAAGTCTCAGATAGAGTTCAAGATCAGGTTAAAAATGGAAAATCCATTTCTTCTGGTTCTAGAGATATACTTGAGGAGAAGTTAAAGAAAGTGCAGTTGGATATCAGGACGTTTGAGGACCGAAAATTCCAATTATCGGTTTACCTGGATGAGAGTGCTCAAGAATTGGATATCCTTAATTCTAGAATTCAGGAACTTGAAGCTCAATTAGTTAAAGAGAATGAGGATTGTAAAAGAATCAATTCAGGAATGAGGAAGTTTATCAGAGCGTACAATCATAATTCACAGTTACAAGAAGAACTGAAAAGATCACAGGCCCGACTTCAAAGGCTTGGTGATCAGCTTGTCTCTGGTATTGCTAGAGTTGGTGCTGAGGAAGAGGATCTAACCATTGATATTGTAAGCAATGGTGAGAATAATAGTCTTCCTCTAATCCCCAAATATAATGCTGAGCAGAGTGATGCATCACCCCATGGAAAAAAGCTGAATGTGCACGCTGATCAGGATGCAGTGGAAGAGTTAAAACAAGATAAATCAAAAGTTGGGAATTCGGTTGAAACAAGAAGAAACAGGAAACGATCTCGATGGAATTTGCCTGCTCAATTGAATGACAAGGATTATGTAGGTCTTGAAACTCCAAATAGTGGAACTGAAGATACTAGGCCTTTAGATATTGAAGGCAAGCACAAGAAAGGAAAGTTGAATTCTTCTGACAACTTTTCTTCAGAAAAGTTGAAGGAATCTAGGAATGAAGTGCCACCAACAAGCATGGCAGCTCATGTGTTTGATGAGGAAGTTGAGATTGTATTTGATGACAGGATTGACCTTAACGAAACAGCACATACAGAAAATGACAATGAAGTGGCATTAGAGGTGAAGGGCATGCCCCTCATGCTTCCCCCCACGATGATTCCTCATACCAATTATTCGCAGTACGAGGGGGACGACGAGAATGTGGACGTGGATGGTCTTGATGAAGGGGAAAATGTGGATATTGTCTGA 1326 0.4201 MVERKQFKTRLCVPYQRGRCTRHNCNFAHGNAELRRFSALHTGRKDNDLRDTLDRRYLSPRRYSPARDGRGHQAIHEHSPSRSMEKKSDRRHWRKQGTAGQSDISASLKVSDRVQDQVKNGKSISSGSRDILEEKLKKVQLDIRTFEDRKFQLSVYLDESAQELDILNSRIQELEAQLVKENEDCKRINSGMRKFIRAYNHNSQLQEELKRSQARLQRLGDQLVSGIARVGAEEEDLTIDIVSNGENNSLPLIPKYNAEQSDASPHGKKLNVHADQDAVEELKQDKSKVGNSVETRRNRKRSRWNLPAQLNDKDYVGLETPNSGTEDTRPLDIEGKHKKGKLNSSDNFSSEKLKESRNEVPPTSMAAHVFDEEVEIVFDDRIDLNETAHTENDNEVALEVKGMPLMLPPTMIPHTNYSQYEGDDENVDVDGLDEGENVDIV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273380g00002 441 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Stsc273380g00002 441 MobiDBLite consensus disorder prediction 51 125 - -
Stsc273380g00002 441 MobiDBLite consensus disorder prediction 280 301 - -
Stsc273380g00002 441 Coils Coil 129 149 - -
Stsc273380g00002 441 Gene3D - 1 36 - -
Stsc273380g00002 441 MobiDBLite consensus disorder prediction 51 97 - -
Stsc273380g00002 441 Coils Coil 202 222 - -
Stsc273380g00002 441 Coils Coil 157 191 - -
Stsc273380g00002 441 MobiDBLite consensus disorder prediction 98 125 - -
Stsc273380g00002 441 MobiDBLite consensus disorder prediction 280 362 - -
Stsc273380g00002 441 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 432 IPR045868 GO:0046872
Stsc273380g00002 441 MobiDBLite consensus disorder prediction 329 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273380g00002 Stsc-Chr273380 4329 10528 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc273380g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273380g00002 - - ahf:112737551 738.799