Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273371g00001 ATGTCAACTTTGCAGATGTCCCATGTTGTTGATTTAGAGCAGGGAAATCATGATGATGATGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGGAGTGATGATGATGAGGATGATGATTCTAGCGTTTGTTTCTCTGATGCAGAAGACGGTGGTTCATGCCATTCTCATTTCTATTCAACACATGGTGATGGTGGCTCAGCCTTTGATGATTGCAGCTTCTCATGTGTCTCTGATCCTGAAGCTGCTGCTGTTGTTCATTGTTCTGGGAGGGCTTCTTCTGCCTCTGATTGCTCTGTGGAGCTGGGAAATGCAACTGGGGTTCCTGAAATCAAAGTGCATTTGAATAATTATATTAATAATAACAACAACAACAACATCAAAGTGGAGAGGGATTGTAGAATTTGTCACATGGGTTTGGAGAGTGATAGATCTGAGTCTGGTGTTCCAATTGAATTGGGTTGTGCTTGTAAAGATGATCTTGCTGCTGCTCACAAAATCTGTGCTGAGACATGGTTCAAGATTAAGGGGAATTTGATCTGCGAAATTTGTCATTCTGTTGCAAGGAATGTTAATGGCGCACTTGACCATTCAAGTGACAGTAACAATACCGCCGCAATAGCCGCACTTTCGTCACATGCTACTCCAGCAGAAGCCCGAAGATTTTGGCACGGTCATCGCTTCCTGAACTTTCTTCTTGCTTGTATGGTTTTTGCATTCGTCATATCATGGCTTTTCCATTTCAATGTGCCGTCGTCGTAG 759 0.4335 MSTLQMSHVVDLEQGNHDDDVVVVVGGGGGGSDDDEDDDSSVCFSDAEDGGSCHSHFYSTHGDGGSAFDDCSFSCVSDPEAAAVVHCSGRASSASDCSVELGNATGVPEIKVHLNNYINNNNNNNIKVERDCRICHMGLESDRSESGVPIELGCACKDDLAAAHKICAETWFKIKGNLICEICHSVARNVNGALDHSSDSNNTAAIAALSSHATPAEARRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273371g00001 252 PANTHER ZINC FINGER, RING-CH-TYPE 34 251 - -
Stsc273371g00001 252 Pfam RING-variant domain 132 183 IPR011016 GO:0008270
Stsc273371g00001 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 193 IPR013083 -
Stsc273371g00001 252 ProSiteProfiles Zinc finger RING-CH-type profile. 124 190 IPR011016 GO:0008270
Stsc273371g00001 252 SMART ringv_2 131 184 IPR011016 GO:0008270
Stsc273371g00001 252 SUPERFAMILY RING/U-box 129 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273371g00001 Stsc-Chr273371 8829 11920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273371g00001 90 252 C3H Transcription Factor Family AT5G05830 58.333 2.86e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273371g00001 - - ahf:112743475 411.764