Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273370g00001 ATGCCCTTGGAAGGAGGGATTTTCATTCAACCATCTACTTCTGCTTCTTCTGCTGCTTCTTCTATTCCTGATCTTTCCCTTCACATAAGCCCTCCAACTGCTTCCGGAGGAGCCCCCACCTTCTTCCATAATAAACCTCAAGATCACACCGACCTCTCTCTTGGAAGAGGAGAACCACCACCGCCACCGCCACCGCCACCGCTACCTCCACCGCCACACCATTTCCATAACATCAACAACTACGGCCTTTCATCAGAAGCAGCCTTGATGAGACCCATCAAAGGGATCCCAGTTTATCACAACCGTTCTTTCCCTTTCCTACCCACGGATAGGGATCACCATAACAACAATAATCAAAATCCAAAGATGTGCTTATATCATCACATGCCTGGTTCTTCTCCTTTGCCGGTGGGAGTGGGGGGTCTGGGTTTAGATCCCATTTCCTTGTTGAATTCGAGCTCCGTAGCGGCGGGAGTGGGAGTGGGAGGGCCTTATACAAGGTTGGCAAGTCACAGTAGTGAGGGTTTCAAATCCCAGCACCATCCATTGCACCCCCACCCCCACTACTACGGAGGGTCGTCAGAGATGAGATCAAGGTTCTTGCCGAAGCTTGCAACGAAGAGGAGCATGAGAGCCCCTAGGATGCGGTGGACTAGCACCCTCCATGCTCGATTTGTTCACGCCGTTGAGCTTCTTGGCGGACATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTCATGGATGTGAAAGATCTCACATTAGCCCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACTACTGACAAGCCTGCACCTTCTTCAGATGGATCAGGAGAGGATGAAATGTCTCCTCCAATGGGAAGCAGTGGTAGTATGCGTCAATTTCAAGAGCAAAGAAGCCAACAAGATATGGATTATTCTTCTTCCAACCCAACACTATGGAGTAATAATTCTTCAAGTAGGGAGCCATGGCCACAAGCTAGTAGTAGTTCAAACGACATAGATGGTTTCAGAGCTCTACCAATGTTTCAGTCACAATCCCTAGGCCATCAAATTCAGGAGTGTGATTCAACCCAACTCAAGAACAGTTTGTCAGGATCTAACATTAATTTAGAGTGCAAGAATCCAA 1138 0.4798 MPLEGGIFIQPSTSASSAASSIPDLSLHISPPTASGGAPTFFHNKPQDHTDLSLGRGEPPPPPPPPPLPPPPHHFHNINNYGLSSEAALMRPIKGIPVYHNRSFPFLPTDRDHHNNNNQNPKMCLYHHMPGSSPLPVGVGGLGLDPISLLNSSSVAAGVGVGGPYTRLASHSSEGFKSQHHPLHPHPHYYGGSSEMRSRFLPKLATKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAPSSDGSGEDEMSPPMGSSGSMRQFQEQRSQQDMDYSSSNPTLWSNNSSSREPWPQASSSSNDIDGFRALPMFQSQSLGHQIQECDSTQLKNSLSGSNINLECKNP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273370g00001 379 MobiDBLite consensus disorder prediction 290 338 - -
Stsc273370g00001 379 MobiDBLite consensus disorder prediction 56 74 - -
Stsc273370g00001 379 MobiDBLite consensus disorder prediction 265 341 - -
Stsc273370g00001 379 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Stsc273370g00001 379 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 23 374 IPR044847 GO:0000976|GO:0006355|GO:0010158
Stsc273370g00001 379 MobiDBLite consensus disorder prediction 12 28 - -
Stsc273370g00001 379 MobiDBLite consensus disorder prediction 12 76 - -
Stsc273370g00001 379 FunFam Myb family transcription factor 211 269 - -
Stsc273370g00001 379 Gene3D - 212 269 - -
Stsc273370g00001 379 SUPERFAMILY Homeodomain-like 210 266 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273370g00001 Stsc-Chr273370 9 3924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273370g00001 1 379 G2-like Transcription Factor Family AT5G16560 42.263 1.04e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc273370g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273370g00001 - - adu:107481025 436.417