Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273364g00002 ATGGGGAAGTTAAAAGATTTTTTCTCAAGACACTATCACTCTCACTCTGGTTTCAGTATCACAACTGTACTTGAGTCTTCACCTTCTTTTCTGTGCGAAATCTGCACAGCCTCCAAAACGGAAGTAAATTGGTTTCTGGTGATCGGATGCACCCACGCATACTGTAAGGACTGTGTCGTGCGGTACATCCGGTCGAAGCTTGATCTGAATGTCATTAACATCCGATGTCCGGTTCCCCGGTGCGGCGGTCTCTTGGAACCCCAGGGTTGCCGCAAAATCCTGCCAAAGAAGGTTTTGAATCGGTGGGAGAAATCATTATGTGAATCTGCTATAATTGAAAATGAAACTGAGAAATTCATCTATTGTCCCTTGAAACGTTGTTCTGCCCTTATGATCATCGATGATGGTCATAATAAGATGACGAAAACAAAGTGCCTTGTGTGTAAGAAGCAAATTTGTGTTCAATGCAATGTGCCATGGCATGAAGGGAATACTTGTGAGGAGTTTCGGAAGGATTATGAAGAAGATAGAACGCTGTTTAATTTGGCAGGTGTGGATATTCTTTCTATTATGGAAGAAGATGACTCGTAA 591 0.4247 MGKLKDFFSRHYHSHSGFSITTVLESSPSFLCEICTASKTEVNWFLVIGCTHAYCKDCVVRYIRSKLDLNVINIRCPVPRCGGLLEPQGCRKILPKKVLNRWEKSLCESAIIENETEKFIYCPLKRCSALMIIDDGHNKMTKTKCLVCKKQICVQCNVPWHEGNTCEEFRKDYEEDRTLFNLAGVDILSIMEEDDS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273364g00002 196 CDD BRcat_RBR_unk 119 169 - -
Stsc273364g00002 196 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Stsc273364g00002 196 ProSiteProfiles Zinc finger RING-type profile. 32 80 IPR001841 -
Stsc273364g00002 196 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 24 171 IPR031127 GO:0004842|GO:0016567
Stsc273364g00002 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 111 IPR013083 -
Stsc273364g00002 196 Pfam Zinc finger, C3HC4 type (RING finger) 32 77 IPR018957 GO:0046872
Stsc273364g00002 196 SMART ibrneu5 100 166 IPR002867 GO:0008270
Stsc273364g00002 196 SUPERFAMILY RING/U-box 113 172 - -
Stsc273364g00002 196 SUPERFAMILY RING/U-box 27 109 - -
Stsc273364g00002 196 Pfam IBR domain, a half RING-finger domain 101 166 IPR002867 GO:0008270
Stsc273364g00002 196 ProSiteProfiles TRIAD supradomain profile. 28 196 IPR044066 -
Stsc273364g00002 196 FunFam RBR-type E3 ubiquitin transferase 27 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273364g00002 Stsc-Chr273364 4496 5165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273364g00002 32 171 C3H Transcription Factor Family AT2G19610 30.405 5.24e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273364g00002 K11975 - twl:119981634 177.948