Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273349g00002 ATGTCCACAATAACAGCAAAGAGAGAGGTTGGTTCTTCCAATGAAGAAGAAACTGATTTGAGAAGAGGACCTTGGACTCTTGAAGAGGATAGTTTACTCATTCACTATATTGCTCGTCATGGTGAGGGTCGTTGGAACATGCTAGCCAAAAGTGCAGGACTGAAGAGAACTGGAAAAAGCTGCAGACTGAGATGGCTCAATTACTTGAAACCTGACATTAAGAGAGGCAACCTTACCCCACAAGAACAGCTCTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTTCCGGGAAGAACAGACAATGAGATCAAGAACTACTGGAGAACAAGGGTGCAGAAACAGGCACGCCAACTCAACATTGAATCCGGAAGCAAGAGATTCATTGATGCTGTTAAGTGCTTCTGGATGCCAAGATTGCTTCAAAAGATGGAACAGAGTTCTGCTTCAAATTCCCCTACTATGATCATGAAAAGCTTTAACAATCATGCAGAAGCTTCTTCAATGAGTACTTCATCAATCTCCAACAACATTCCTAACTCTCCATCTCCACCACAAAGGGAATTATTCATGGATGTTCCGAATAATCAGTTCAGCAACATGTCCAGCCCCAACAACAATAATAATAATGTTCCTCCTTCCTCTGATTCACTTCAATTCTCATCACAGCTATTTGACATGCCACAACACGTAGCAGCAGCATCAAATTCTCCCAATGTATTTGAGAACAACAATGTTTATTATTACAACAACAATCCAATTGTTCAAGAAAACTGGAATAATGTTGTTGATGCCAATGGCAATAACAACTATGGTGGTGCCATGATGGAAGGGCTAAGCATGGATCCTCTGTCACTAATGGGAACTTATTATGACATTCCACAGTTTGATTTTCAAACCTGTGGGAGTGACTGGATTTTAGACAACAACAACAACAACATGGGTGATACTTTATGGAACATGGATTCTATGTAA 999 0.4084 MSTITAKREVGSSNEEETDLRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQSSASNSPTMIMKSFNNHAEASSMSTSSISNNIPNSPSPPQRELFMDVPNNQFSNMSSPNNNNNNVPPSSDSLQFSSQLFDMPQHVAAASNSPNVFENNNVYYYNNNPIVQENWNNVVDANGNNNYGGAMMEGLSMDPLSLMGTYYDIPQFDFQTCGSDWILDNNNNNMGDTLWNMDSM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273349g00002 332 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 37 46 IPR001345 GO:0003824
Stsc273349g00002 332 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Stsc273349g00002 332 CDD SANT 24 69 IPR001005 -
Stsc273349g00002 332 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 203 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc273349g00002 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Stsc273349g00002 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 69 IPR017930 -
Stsc273349g00002 332 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Stsc273349g00002 332 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Stsc273349g00002 332 Gene3D - 78 120 - -
Stsc273349g00002 332 MobiDBLite consensus disorder prediction 1 21 - -
Stsc273349g00002 332 FunFam MYB transcription factor 79 142 - -
Stsc273349g00002 332 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Stsc273349g00002 332 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Stsc273349g00002 332 SMART sant 21 71 IPR001005 -
Stsc273349g00002 332 SMART sant 74 122 IPR001005 -
Stsc273349g00002 332 FunFam Myb transcription factor 22 74 - -
Stsc273349g00002 332 Gene3D - 19 75 - -
Stsc273349g00002 332 MobiDBLite consensus disorder prediction 175 196 - -
Stsc273349g00002 332 CDD SANT 79 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273349g00002 Stsc-Chr273349 11018 12195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273349g00002 17 160 MYB Transcription Factor Family AT1G68320 80.556 5.72e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc273349g00002 Myb_DNA-binding 3.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273349g00002 K09422 - gmx:100780759 382.489