Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273335g00001 ATGAGTCTAAAGCTTGGTAAACTAACAACCATAGTTATTTCTTCTCCACAATTTGCCAAAGAAATACTCCATAAACATGACCAAATCTTTTCTTATAGGACAATCCCTGATTCTGCTAGGGCACATGATCGATACCTATTTTCAATCTTTTGGATGCCACCAATATCACTACAATGGAGGGTTCTTAGGAGAATTTGCGCAACCAAAGTGTTTTCCGCCCAAAATATTGACGCGACACAAGTTATTCGCGAAAAGAAAATTCAAGAATTGCTGGATTTTGTGAAGATAAAAGTCAAAAAAGTTGAAGCGTTCTGCATTGATGAGGTTATCTTTACAACCATGCTTAATATACTGTCAAACACACTTTTCTCTATGGATTTTGCTCGTTACGCTTCCGACAAATCACAAGAGTTCAAGAACATCGTCGGAGGTGTCTCCCAAGAATTTGGAAGGCCTAATGTTGTGGATCATTTTACAATCCTTGGATTGCTTGATCCTCAAGGTGTGCGTTCAAGAATGAAGATTTACTTAGAGAAGTTAATTACTTTGTTCGATGGCCTTGTAGAAGAAAGATTGAAATCAAGAGGCTTGGCAATGGGATCCGAATCCAACAATAATGACGTGTTAGATTCTGTGCTAAATTTCATGTTGGAGGAAAATTCACAAATTACCCGATCTCATGTCATACGTTTACTTTTGGATTTATTTGTGGCTGGAATAGACACTACATCAAATATGTTAGAGCATGCAATGACAGAATTGTTATATAACCCTGAAAAGTTTACAAAAGTCAGAGAAGAGATTCAACAAGTTCTTAGCAAGAGTAGTAGCGGAAAACTAATTGAAGAATCAAACATCTCAAAGCTTCCATTCCTAAGAGCAATAGTGAAGGAAACTTTACGTTTGCACCCACCTGCCCCATTCTTAATGCCACACAAATCAAATAAGGATGTTGAAGTTTGTGGCTACATGATCCCAAAAAATTCAAAAATTATAGTTAATTTATGGGGTATGGGCAGAGATTCAAGTGTTTGGGAAAACCCTAATGAATTCCTGCCTGAAAGATTTTTGGGCAGCAAGATTGATTTTAAAGGTCAATATTTTGAGTTGATTCCGTTTGGAGCTGGAAGAAGAATATGCCCTGGATTACCAATGGCTTCTAGAACTATACACATTATATTGGCTTCTCTTTTATATCATTATGATTGGAAGCTTATGAATGAGGTAAAGACTAGTGAGGACATTGATTATTTGTCTGAGAATTTTGGAGTTACCTTACATAAGACCCAATCCCTTCTAGTTATTCCTATGCCCAATTGTGGAACTTGA 1329 0.3679 MSLKLGKLTTIVISSPQFAKEILHKHDQIFSYRTIPDSARAHDRYLFSIFWMPPISLQWRVLRRICATKVFSAQNIDATQVIREKKIQELLDFVKIKVKKVEAFCIDEVIFTTMLNILSNTLFSMDFARYASDKSQEFKNIVGGVSQEFGRPNVVDHFTILGLLDPQGVRSRMKIYLEKLITLFDGLVEERLKSRGLAMGSESNNNDVLDSVLNFMLEENSQITRSHVIRLLLDLFVAGIDTTSNMLEHAMTELLYNPEKFTKVREEIQQVLSKSSSGKLIEESNISKLPFLRAIVKETLRLHPPAPFLMPHKSNKDVEVCGYMIPKNSKIIVNLWGMGRDSSVWENPNEFLPERFLGSKIDFKGQYFELIPFGAGRRICPGLPMASRTIHIILASLLYHYDWKLMNEVKTSEDIDYLSENFGVTLHKTQSLLVIPMPNCGT 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273335g00001 442 Gene3D Cytochrome P450 1 434 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS P450 superfamily signature 371 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS P450 superfamily signature 238 255 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS P450 superfamily signature 294 305 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 CDD CYP76-like 1 436 - -
Stsc273335g00001 442 FunFam Geraniol 8-hydroxylase 177 435 - -
Stsc273335g00001 442 Pfam Cytochrome P450 2 411 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 SUPERFAMILY Cytochrome P450 2 435 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS E-class P450 group I signature 227 244 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS E-class P450 group I signature 334 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS E-class P450 group I signature 113 131 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS E-class P450 group I signature 18 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS E-class P450 group I signature 380 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS E-class P450 group I signature 247 273 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS E-class P450 group I signature 370 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PRINTS E-class P450 group I signature 293 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273335g00001 442 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 438 - -
Stsc273335g00001 442 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 373 382 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273335g00001 Stsc-Chr273335 354 2343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273335g00001 1 437 Cytochrome P450 AT2G45550 46.804 2.12e-146 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273335g00001 - - gmx:100809483 564.688