Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273328g00001 ATGCACACACACACACAATTCGATTCCTCTCTCTCTTCGATTCTGACGGCGGCGGCATCATGGCCAGCCTTCGCCGGCGCGAATGTTTCGAGACAACTCCTGGAGGTTGGGTTCACTCATGATCCAAAACATATTATAGTCATTGACAGCTCTTCAAAGACGTATACCGTCCGTGTTAGAAATAAGTCCAAAAAACAGAAAACCATGGTGTTGGGTAGGGGCTGGAAAAAATTTCAAGTTGCTAATGGTTTGAGGAAGGGAGACGTTATCAAACATATCCTGATCATCTCCGTTGTGTTGTCCGTAGAGCATAGCTATTCTGAGTTTGAAGACTAA 336 0.4494 MHTHTQFDSSLSSILTAAASWPAFAGANVSRQLLEVGFTHDPKHIIVIDSSSKTYTVRVRNKSKKQKTMVLGRGWKKFQVANGLRKGDVIKHILIISVVLSVEHSYSEFED 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273328g00001 111 SUPERFAMILY DNA-binding pseudobarrel domain 33 90 IPR015300 -
Stsc273328g00001 111 CDD B3_DNA 30 90 IPR003340 GO:0003677
Stsc273328g00001 111 Pfam B3 DNA binding domain 41 90 IPR003340 GO:0003677
Stsc273328g00001 111 Gene3D - 26 105 IPR015300 -
Stsc273328g00001 111 ProSiteProfiles B3 DNA-binding domain profile. 45 111 IPR003340 GO:0003677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc273328g00001 B3 5.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273328g00001 - K21470 lsv:111879325 42.743