Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273291g00001 ATGGGAAGGTGTCAATGCTGCGATGATCAGAATGGCCTCAAAAAAGGACCATGGTCTCCAGAAGAAGATGAAAAGCTTGTCCAGTATATTAAAAAACATGGCCATCGAATTTGGAGGGCTGTCCCTAAGCTAGCAGGTCTTAATAGATGCGGTAAGAGCTGTAGGTTTAGATGGACGAATTATTTAAGGCCTGATGTGAAGAGGGGCAAGTTCTCTCAAGAAGAGGAGCAAACAATTATGCGTCTTCATTCCACTCTTGGAAACAGATGGTCAGCAATTGCAACACATCTTCCTGGGAGGACTGATAACGAGATAAAGAATTTCTGGAACACTCATTTGAAGAAGAAGCTGATTCAAATGGGTCTTGATCCAGCTACTCATCAGCCAGTGTTTCAACAGAATCTGACCTTACAAGCAGAATTAGCACTTCAGCTGGCAAATCTTAGTAATAATAACCATCATCATCATCATCAATATTTACCTCAATCTGCTATGATGGCCTCATCTAATTCCTTGATGAGTACCATTGGCAGCTACTCTTCCTCCTATGACCTAAACAGCAATAATAATGGAGTCACAAACAACATGGAACCTTTCAGTTTGTTAAACTTAACCAACATGTCTAATATGAAAGAGATCAATCAAGCAGTTATAATGGATAATAATATTAACAATTCATCGTTAGGGACATTTCCTCGTCATGGAAATGGGATTATTGATGATTATGATAGCTCCCATCTGCTTCATGACTCTTACCATCAAAACATGCTATTATTATCTCACTTTTCAGACCCACAACAAGTCCCTTTCATCGGTTCCCAACCGTGTTTCAATATTGATGAGCAGGGTCGATATGAAGGTACTACTAATAATAATGATGACTCCAGGTGGATTATTCCATCTATGGCTCCAATTCATGTAGTCACCGGGTCTGGGAACATGAAGTAG 948 0.3987 MGRCQCCDDQNGLKKGPWSPEEDEKLVQYIKKHGHRIWRAVPKLAGLNRCGKSCRFRWTNYLRPDVKRGKFSQEEEQTIMRLHSTLGNRWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGLDPATHQPVFQQNLTLQAELALQLANLSNNNHHHHHQYLPQSAMMASSNSLMSTIGSYSSSYDLNSNNNGVTNNMEPFSLLNLTNMSNMKEINQAVIMDNNINNSSLGTFPRHGNGIIDDYDSSHLLHDSYHQNMLLLSHFSDPQQVPFIGSQPCFNIDEQGRYEGTTNNNDDSRWIIPSMAPIHVVTGSGNMK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273291g00001 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc273291g00001 315 FunFam MYB-related transcription factor 14 67 - -
Stsc273291g00001 315 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc273291g00001 315 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc273291g00001 315 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Stsc273291g00001 315 FunFam Transcription factor MYB39 70 131 - -
Stsc273291g00001 315 Gene3D - 70 117 - -
Stsc273291g00001 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Stsc273291g00001 315 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Stsc273291g00001 315 Gene3D - 14 67 - -
Stsc273291g00001 315 SMART sant 14 64 IPR001005 -
Stsc273291g00001 315 SMART sant 67 115 IPR001005 -
Stsc273291g00001 315 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Stsc273291g00001 315 CDD SANT 70 113 IPR001005 -
Stsc273291g00001 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Stsc273291g00001 315 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273291g00001 Stsc-Chr273291 5301 6449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273291g00001 1 302 MYB Transcription Factor Family AT1G34670 45.045 8.06e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc273291g00001 Myb_DNA-binding 5.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273291g00001 K09422 - qsa:O6P43_015308 272.322