Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273269g00001 ATGGGGGCCATAAAATCAGCCATTGGAGATGCAATCTTAACATCAATATGGGTCTTCAGCCTCTCATCACAAAGGATTATCTCATCAGAGATATCTTCATTTCTTGGATTCAAACCATTCACACCCCCATCACTGTTCCTCTCAACAATCGTAAACTCCATCATGGTCTTAACCATAACCTTCATTGGAAGGCTCTTAGGTGGTGCAAGCTTCAATCCTTCATCCACAGTTTCATCCTACTTCTTAGGCCTAAGGCCAGATTCATCACTCTCATCAATGGCCATTAGGTTCCCTGCTCAAGCACTTGGTGGGGCTCTTGGGGCAAAAGGGTTACTTTCTGTCATGCCCCCACACTATAAGATTTTGCTGAAAGGTCCTTACTTGAAGGTGGATTTGCACACTGGTGCTTTTGTTGAAGGAGCATTGGTTTTTGCACTTAACTTGGCTATACTCGTTATTCTTATGAAGGGTCCTAAGAGTCCTTTCTTGAAGGTTTATATGATGTCTCTGACAACTTTGACTTTGGGTATTTGTGGTTCTGGTTACACTGGACCTTCTATGAACCCTGCAAATGCATTTGGTTGGGCTTATATGTATGATAGGCATATGAATTGGGAGCTGTTTTATGTGTATTGGATTTGTCCTTTTATTGGGGCAATTTTTGCAGCTTTGGTTTATAAGACTCTGTTCATGTCAACACCAGAGATGAAGAAGAAGAAGAAGAAGAAAGCTTGA 735 0.4163 MGAIKSAIGDAILTSIWVFSLSSQRIISSEISSFLGFKPFTPPSLFLSTIVNSIMVLTITFIGRLLGGASFNPSSTVSSYFLGLRPDSSLSSMAIRFPAQALGGALGAKGLLSVMPPHYKILLKGPYLKVDLHTGAFVEGALVFALNLAILVILMKGPKSPFLKVYMMSLTTLTLGICGSGYTGPSMNPANAFGWAYMYDRHMNWELFYVYWICPFIGAIFAALVYKTLFMSTPEMKKKKKKKA 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273269g00001 244 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Stsc273269g00001 244 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc273269g00001 244 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc273269g00001 244 PRINTS Major intrinsic protein family signature 52 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc273269g00001 244 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc273269g00001 244 PANTHER AQUAPORIN SIP1-1 1 241 IPR044222 GO:0015250
Stsc273269g00001 244 Pfam Major intrinsic protein 44 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc273269g00001 244 SUPERFAMILY Aquaporin-like 4 236 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273269g00001 Stsc-Chr273269 8346 9080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273269g00001 1 242 Major Intrinsic Protein MIP AT5G18290 41.152 2.82e-54 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273269g00001 K09875 - gmx:100775829 303.138