Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273262g00003 ATGGGGAGGAGAACAAGGTGCTTCTTGGACATAAGCATAGGAGATGATCTTGAAGGAAGGATAGTGGTTGAGCTCTTCAACGACGTCGTTCCTAAAACTGCTGAGAATTTCAGAGCTCTCTGCACCGGTCACAAAGGCATTGCTCCCAACACCTCCGTCCCTCTTCATTTCAAGGGATCATGTTTTCATCGTGTTATTAAGGGATTTATGATCCAAGGAGGGGATATTTCTGCTGGAGATGGAACTGGAGGAGAATCTATATATGGACTCAAGTTCGAAGATGAAAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAACTCCGGTCCCAATACGAATGGGTCTCAGTTCTTTATCACAACTACTCGAACTTCTCATCTAGATGGTAAGCATGTTGTGTTTGGGAAAGTAGTTAAAGGAATGGGAGTGGTCCGTTCGATCGAGCATGTTACTACCGGAGACAATGACCGTCCCACTCTTGATGTGAAAATTGTGGATTGTGGAGAAATTCCTGAAGGAGAAGATGATGGAATCTCCAACTTTTTCAAAGATGGTGATACTTATCCTGATTGGCCAGCAGATCTTGATGAGGGTCCTAATGAACTTGAATGGTGGATGGAATCTGTTAACAACATTAAAACTTTTGGTAATGATTATTACAAGAAGCAAGATTACAAGATGGCTCAAAAGAAGTATCGAAAGGCTTTGCGCTACCTCGATATTTGTTGGGAAAAAGAGGGGATTGATGAAGAGAAAAGTTCTGGTTTGAGAAAAACAAAGTCTCAGATTTTCACAAACAGCTCTGCTTGTAAATTGAAATTAGGCGATCTCAAAGGGGCATTATTGGATACCGAATTTGCAGTGCGAGATGGAGAGAACAATGCCAAAGCTTTGTTCCGCCAAGGTCAGGCATACATGGCACTCCATGACATAGATGCTGCAGTTGAAAGCTTTAAGAAGGCATTGACCTTGGAGCCAAACGATGCTGGAATAAAAAAGGAACTTGCTGCTGCAAGGAAGAAGATAGCCGACAGGCGCGATAAAGAGAAAAAGGCATACAGCAAGATGTTCCAATAA 1089 0.4224 MGRRTRCFLDISIGDDLEGRIVVELFNDVVPKTAENFRALCTGHKGIAPNTSVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDNDRPTLDVKIVDCGEIPEGEDDGISNFFKDGDTYPDWPADLDEGPNELEWWMESVNNIKTFGNDYYKKQDYKMAQKKYRKALRYLDICWEKEGIDEEKSSGLRKTKSQIFTNSSACKLKLGDLKGALLDTEFAVRDGENNAKALFRQGQAYMALHDIDAAVESFKKALTLEPNDAGIKKELAAARKKIADRRDKEKKAYSKMFQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273262g00003 362 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 8 173 IPR002130 GO:0000413|GO:0003755
Stsc273262g00003 362 ProSiteProfiles TPR repeat profile. 299 332 IPR019734 GO:0005515
Stsc273262g00003 362 Pfam Tetratricopeptide repeat 299 332 IPR001440 GO:0005515
Stsc273262g00003 362 SMART tpr_5 299 332 IPR019734 GO:0005515
Stsc273262g00003 362 SMART tpr_5 213 246 IPR019734 GO:0005515
Stsc273262g00003 362 FunFam peptidyl-prolyl cis-trans isomerase D 211 362 - -
Stsc273262g00003 362 CDD cyclophilin_ABH_like 6 172 - -
Stsc273262g00003 362 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 9 172 IPR002130 GO:0000413|GO:0003755
Stsc273262g00003 362 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 174 - -
Stsc273262g00003 362 SUPERFAMILY TPR-like 209 360 IPR011990 GO:0005515
Stsc273262g00003 362 Gene3D Tetratricopeptide repeat domain 213 362 IPR011990 GO:0005515
Stsc273262g00003 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Stsc273262g00003 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Stsc273262g00003 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 133 148 IPR002130 GO:0000413|GO:0003755
Stsc273262g00003 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 62 74 IPR002130 GO:0000413|GO:0003755
Stsc273262g00003 362 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 105 120 IPR002130 GO:0000413|GO:0003755
Stsc273262g00003 362 FunFam Peptidyl-prolyl cis-trans isomerase D 1 179 - -
Stsc273262g00003 362 SUPERFAMILY Cyclophilin-like 4 176 IPR029000 -
Stsc273262g00003 362 ProSiteProfiles TPR repeat region circular profile. 299 332 - -
Stsc273262g00003 362 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 57 74 IPR020892 GO:0003755|GO:0006457
Stsc273262g00003 362 Gene3D - 1 180 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273262g00003 Stsc-Chr273262 12282 15444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273262g00003 18 171 U-box Gene Family AT5G67530 44.516 3.70e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273262g00003 K05864 - gmx:100804110 662.914