Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273252g00004 ATGGAGGTGGAGGAAGCATGTTACGTTAAAGATTCTTTAATTGTTGCTGGCCTTGATAAGGTACCACTAACAGTGGTGACCCATTATAAAAAGCTAGGTGTTGTTTCTGCCGTCGACAAGAGAGCGTTGAAGGCCCCCAACACTCACAGTTCGTTGTCGTGGTGTTGGGTATCGGTGGATTCGACCTCGCAGCCGCCACTGCCGCGTCCCCAACGCCGTCCCCAGCCTCTTCCCTCTCTGTCTCTTCTCTCTCTCACGGTGTCTCTCTCTGCCTCGGACTCAAAGCTCTTTCCCATCGGCGTCGCGTTCAGCAGTCGTGTCCTCCAACACCAGCCACCGCGTCGTTCAGTATCCGGTCTCCACCTGCTTACTGATAATGGCAACACCAAGGATGACCTCAGACTCCCCACTGATGACGATCTTCTTACTCAGGGTAAGGACCTTGTTGTGTCAGTCATGTCTGTCATGGGTGAGGAGCAGATCTGTGCCCTCAAGGATATTGGCCCAAAGAACTAG 516 0.531 MEVEEACYVKDSLIVAGLDKVPLTVVTHYKKLGVVSAVDKRALKAPNTHSSLSWCWVSVDSTSQPPLPRPQRRPQPLPSLSLLSLTVSLSASDSKLFPIGVAFSSRVLQHQPPRRSVSGLHLLTDNGNTKDDLRLPTDDDLLTQGKDLVVSVMSVMGEEQICALKDIGPKN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273252g00004 171 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 120 168 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Stsc273252g00004 171 MobiDBLite consensus disorder prediction 118 137 - -
Stsc273252g00004 171 SUPERFAMILY Nucleic acid-binding proteins 120 167 IPR012340 -
Stsc273252g00004 171 SMART eIF_5a_2 116 165 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Stsc273252g00004 171 Gene3D - 109 170 IPR012340 -
Stsc273252g00004 171 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 120 165 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273252g00004 Stsc-Chr273252 8066 9429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273252g00004 122 170 Eukaryotic Initiation Factors Gene Family AT1G69410 71.429 1.55e-20 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273252g00004 K03263 K02180 cpap:110811212 87.4261