Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273194g00002 ATGTTAATTGATGAAGATGATGGAACAGGAGCACAAAGGAGGGAGAGGGAGTTCAAAGTTGTGATAAAATTGGCTGCTCGGGCAGACCTTCACCATTTAGGGCTCTTTTTGCAAGGGAGGCAAACTGATGCACCCCAAGAAGCTTTGCAGGTTCTTGATATTGTGTTGCGTGAACTCCCTACCACCAGGTATTGTCCTGTAGGAAGATCATTTTATTCACCTGATCTTGGAAGAAGGCAGCCTTTGGGTGAGGGGTTAGAAAGCTGGCGTGGTTTCTATCAGAGTATTCGTCCTACGCAGATGGGACTTTCTCTGAACATTGATATGTCCTCCACTGCGTTTATTGAGCCATTACCGGTAATTGAGTTTGTAACTCAGCTACTGAACAGGGATGTTTCCACCCGACCACTGTCAGATGCTGATCGTGTGAAGATCAAGAAAGCTCTGCGTGGTATCAAGGTTGAAGTAACTCATCGCGGAAACATGAGAAGAAAATATCGCATCTCTGGTCTGACTTCCCAGGCTACTAGAGAGTTGACATTCCCTGTCGACGAGAGGGGAACAATGAAGTCCGTTGTTGAGTATTTCTCTGAAACCTACGGGTTTCACATTCAACATACTCAGTGGCCTTGTTTGCAAGTGGGAAATACACAGCGGCCAAATTATCTGCCAATGGAGGTTTGCAAGATTGTAGAAGGGCAGAGGTATTCTAAGAGGTTGAATGAAAGGCAGATCACTGCTTTGCTAAAAGTCACATGTCAGCGTCCTGTTGAAAGGGAGCGTGACATAATGCAGACAGTACATCACAATGCCTATGATCAAGATCCTTATGCTAAGGAGTTTGGAATCAAGATCAGTAGAGAAAAAGACTGCCTACCTCAGGTTGGTCAGTGGAACATGATGAACAAGAAAATGGTTAATGGAGGAACAGTAAACCATTGGTTCTGCATTAACTTCTCCAGACATGTGCAAGATAGTGTTGCTCGCACATTTTGTTATGAACTCGCTCAGATGTGTCAAGTATCTGGCATGGCATTCAATCTGGAGCCAGTAGTGCCCCCAGTCAGTGCTCGTCCTGACCAAGTCGAGAAGGTCCTGAAAACTAGGTATTATGATGCCAAGAACAAGCTGCCTGGAAAGGATCTTGATTTGCTTATCGTTATCCTGCCTGACAATAATGGTTCTCTTTATGGTGACCTAAAACGGATATGTGAGACTGATCTTGGGCTTGTTTCCCAATGTTGTTTAACAAAGCATGTCTACAAAATGAGCAAGCAGTATCTTGCAAATGTTGCTTTGAAAATTAATGTTAAGGTTGGTGGAAGAAACACCGTGCTTGTTGATGCCCTTTCGCGGCGCATTCCCCTTGTCAGTGACAGGCCTACAATCATTTTTGGAGCTGATGTTACTCATCCTCACCCTGGAGAGGATTCAAGCCCATCTATTGCAGCTGTTGTGGCTTCCCAAGATTGGCCCGAGATTACCAAGTATGCTGGTTTGGTTTGTGCACAAGCACATCGACAGGAACTCATTCAAGATCTCTTCAAGCAATGGCAAGATCCTGTTAGAGGAACGGTGACGGGTGGAATGATCAAGGAGCTACTCATCTCTTTCCGGAGGGCTACCGGACAGAAGCCACAGCGCATCATATTTTACAGGGATGGTGTGAGTGAGGGCCAATTTTATCAAGTGCTATTGTTTGAGCTTGATGCTATTAGAAAGGCCTGTGCATCCCTTGAGCCCAATTATCAGCCTCCCGTGACTTTTGTGGTAGTTCAAAAGCGCCATCACACTAGGCTCTTTGCCAGCAACCATCATGATCGAAATTCTATTGATCGGAGCGGGAATATATTGCCAGGTACTGTCGTGGACTCGAAAATCTGTCACCCAACTGAATTTGACTTTTATCTTTGTAGTCATGCTGGAATTCAGGGCACTAGCCGTCCAGCTCACTATCATGTTCTGTGGGATGAAAACAATTTCACAGCTGATGCTCTTCAAATGCTTACAAACAACCTGTGCTACACCTATGCCAGATGCACCCGTTCTGTTTCAATTGTGCCCCCTGCATATTATGCTCACTTGGCTGCATTCCGAGCTCGCTTTTACATGGAGCCGGAGACATCGGACAGTGGCTCCATGACAAGTGGTGCTGCAGCGGGTCGCGGTATGGGTGCAGGACGCAGCACACGTGCACCCGGTGCCAGTGCTGCTGTAAGGCCCCTGCCATCGCTCAAGGACAATGTCAAGAGGGTCATGTTCTATTGTTGA 2271 0.4632 MLIDEDDGTGAQRREREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVTQLLNRDVSTRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFSETYGFHIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYDQDPYAKEFGIKISREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRHVQDSVARTFCYELAQMCQVSGMAFNLEPVVPPVSARPDQVEKVLKTRYYDAKNKLPGKDLDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVYKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDRNSIDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAAAGRGMGAGRSTRAPGASAAVRPLPSLKDNVKRVMFYC 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273194g00002 756 ProSiteProfiles Piwi domain profile. 384 705 IPR003165 GO:0003676
Stsc273194g00002 756 Pfam PAZ domain 122 247 IPR003100 GO:0005515
Stsc273194g00002 756 ProSiteProfiles PAZ domain profile. 118 232 IPR003100 GO:0005515
Stsc273194g00002 756 CDD PAZ_argonaute_like 117 231 - -
Stsc273194g00002 756 Gene3D - 280 447 - -
Stsc273194g00002 756 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 10 706 - -
Stsc273194g00002 756 Pfam Mid domain of argonaute 293 368 IPR032473 -
Stsc273194g00002 756 FunFam Argonaute 10 280 447 - -
Stsc273194g00002 756 Pfam N-terminal domain of argonaute 6 56 IPR032474 -
Stsc273194g00002 756 CDD Piwi_ago-like 276 704 IPR045246 -
Stsc273194g00002 756 FunFam protein argonaute 10-like 453 756 - -
Stsc273194g00002 756 MobiDBLite consensus disorder prediction 713 738 - -
Stsc273194g00002 756 SMART DUF1785_2 65 117 IPR014811 -
Stsc273194g00002 756 SMART PAZ_2_a_3 122 254 IPR003100 GO:0005515
Stsc273194g00002 756 SMART Piwi_a_2 384 705 IPR003165 GO:0003676
Stsc273194g00002 756 Pfam Argonaute linker 1 domain 66 116 IPR014811 -
Stsc273194g00002 756 FunFam Protein argonaute-2 111 237 - -
Stsc273194g00002 756 Pfam Piwi domain 385 704 IPR003165 GO:0003676
Stsc273194g00002 756 Gene3D - 453 756 IPR036397 GO:0003676
Stsc273194g00002 756 SUPERFAMILY Ribonuclease H-like 370 705 IPR012337 -
Stsc273194g00002 756 SUPERFAMILY PAZ domain 112 272 IPR036085 GO:0005515
Stsc273194g00002 756 Gene3D paz domain 111 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273194g00002 Stsc-Chr273194 6628 11706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273194g00002 2 756 Eukaryotic Initiation Factors Gene Family AT1G48410 84.103 0.0 1370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273194g00002 K11593 - gmx:100780375 1432.93