Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273188g00002 ATGGCTGAAATTGCTTCTGGTGCGGCGGCAACACTCTTAGCCAATCTAGCAGCAAAATCATTCCAAGAAATTGCTCTGGCATGTGGTCTTACAGATGATGTAAAAAAGCTTCAAAGTTCTTTGAGAATCATCAATGCATATCTATTAGATGCTGAGAACAAAAAAGCCAAAAATCGCAGCATAGTGGAGTGGTTGAAGCAACTCAGAGATGCATTTGATGATGCTGGTGACATATTGGACGAAATAGAGTACGAGGCAAAACGTAATAAAGTAGTTAAACTGTATGGAAGCATTGGCACTAAGGTACACCGATTCTTCTCATATAAAAGTAACCCACTTTCATTTCGTATCAGGATGGCACAGAAAATCAGAGATATGAATTTGAAGATAGATGTAAAAACAAAAGAAGGGAAAAACATGGGTATAGTTGAACAACATGTCAACACTCCAATAGTGGAGCACAGTATACCATGGCGTGAAACTAGTTCTTCGTTGCCTTTACGTGTGTGTGGTAGACATGAAGAGAAAGAAGAGATCATAGAATTATTAATGGGGCAACATTCAGAGGCTAGTAATGTTGATGTGGTATCGATTGTTGGGATCGGAGGTTTGGGGAAGACTACTCTTGCTCAAATGGTTTATGATGATTATAGAGTGACGGATCATTTTAATATGTTAATGTGGGTGTGTGTCTCTGACGATTTTGATGTGAAAATGTTAATACAAAAGATTATTCATGCTGCCTCAAGGACAAAGAATGTGGTTGATGCAAATTCTAGTTTGGAACATATGGTTTCTCTTCTCAATGAAAAATTATATGGGAAGAAATTCTTACTTGTGTTAGACGATGTTTGGAATGAAAACCACAACAAATGGGATGAATTCAGAAATCACTTGTTGAAGGCAGGGAGTCACAAAGGATCAAAAGGAAGTAAAATCATAGTGACCACACGTAGCCACAAAGTTGTTGATATCGTTGGAGGTGGTCTTCTTATCAATTTAGAAGCACTTCCTGAGGATGAATGTTGGAAGTTGTTTGTTAAATGTGCATTCCAAGAAGAGAGCGAAGAAGACAAATACCCAAGACTTAAGCAAATTGGGGTGGAAATTGTTAAAAAATGCAAAGGGGTGCCCTTAGCTATAACAACTTTGGGTAGCTTGCTTAAATCAAAATGCCATGATGAAAATGAGTGGAGAAAAATATGTGATAGTGAGGTGTGGAAACTTGATCAAGAAGAGACTGGCATTTTGCCATCATTAAGATTGAGTTATAATCACTTGCCAACAGAAGTGAAGCAATGTTTTTCATACTGCTCTTGTTTTCCAAAAGATTATGAATATGAGGTTATTGAGTTGATTATGTTTTGGACGGCTCATAAACTTCTGCAACCTATTCATGAAGATGAAGATGCGGAAGATATTGGGGAGTTGTATATTAGGAAGCTTGTTTCAGTATCTTTTCTTCAGATTGAAGGAGATTTCAAATATCCGATTTCGTTTGAAAAACTCAAAATGCATGATCTTGTACATGATCTTGCAAAATTAACAATGAATAAGTCAAGTAAGATAAGAAGTATTGTGCAAGAAGGAGAACAAGAAACGTCTGCAGAATGGACCTCTAACAAATTCAAATATATGGAATCTAGCTCATTGCTTGATGATTTCTTTGACACAATGAAGAAGCACTTGAGATACCTCAATCTAAAACATCCTCCTACTTTGGAAAAATACCCTTATTCCATTTGTAAGCTACAAAATTTGCAGAGTTTGAACCTTCGCGGTCATAACAAAATCCGTACGCTTCCAAAAAACATGAAATACCTCATCAGCCTTCAATATTTGTTATGGAGGGTCAAAGCTACAAGTTTGTCCTCAATGAACATAGAGCGCTTCCAGCAACTCAAATTCTTATATCTTGACGGTTGTTCAGAGTTAGTGTCTATACCAAGTGCCGTCGGTCGCTTGACTACTTTAAAAAAGTTGATGATTCATTGGTGTAATAATTTGGTGAGTTTTGAGGATGAAGAGGAAGAAGAAGAAGGAAAGGAGCATGTGGCAGTCCATAATTTAAACCTTCAATTATTCTCTATCAGCGGGGCATGCAAGTTGAAAGCTTTACCTAATTGGCTTGAAAGAGCTACTAAATTGCGATATTTGGGCATACAGGGAACAAGTATAAAATCATTTCCCACAAGATTGCCGATGGCCTCTCTTGAACAACTTCATATCAGTATATGCTCAGAACTGTCATCTCTTCCAGATTACATGGATCAAACTCATAGTCTTCAGTATTTGAGTATATTGCTTTGTCCTACACTAAGCCAAAAGTATAATAAGAGGACAGGTCCGGATTGGGGCAAAATTGCTCATATCCCACGTTGTCAGATTGATGAGCGACCAACATGA 2406 0.3749 MAEIASGAAATLLANLAAKSFQEIALACGLTDDVKKLQSSLRIINAYLLDAENKKAKNRSIVEWLKQLRDAFDDAGDILDEIEYEAKRNKVVKLYGSIGTKVHRFFSYKSNPLSFRIRMAQKIRDMNLKIDVKTKEGKNMGIVEQHVNTPIVEHSIPWRETSSSLPLRVCGRHEEKEEIIELLMGQHSEASNVDVVSIVGIGGLGKTTLAQMVYDDYRVTDHFNMLMWVCVSDDFDVKMLIQKIIHAASRTKNVVDANSSLEHMVSLLNEKLYGKKFLLVLDDVWNENHNKWDEFRNHLLKAGSHKGSKGSKIIVTTRSHKVVDIVGGGLLINLEALPEDECWKLFVKCAFQEESEEDKYPRLKQIGVEIVKKCKGVPLAITTLGSLLKSKCHDENEWRKICDSEVWKLDQEETGILPSLRLSYNHLPTEVKQCFSYCSCFPKDYEYEVIELIMFWTAHKLLQPIHEDEDAEDIGELYIRKLVSVSFLQIEGDFKYPISFEKLKMHDLVHDLAKLTMNKSSKIRSIVQEGEQETSAEWTSNKFKYMESSSLLDDFFDTMKKHLRYLNLKHPPTLEKYPYSICKLQNLQSLNLRGHNKIRTLPKNMKYLISLQYLLWRVKATSLSSMNIERFQQLKFLYLDGCSELVSIPSAVGRLTTLKKLMIHWCNNLVSFEDEEEEEEGKEHVAVHNLNLQLFSISGACKLKALPNWLERATKLRYLGIQGTSIKSFPTRLPMASLEQLHISICSELSSLPDYMDQTHSLQYLSILLCPTLSQKYNKRTGPDWGKIAHIPRCQIDERPT 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273188g00002 801 Gene3D - 424 515 IPR036388 -
Stsc273188g00002 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 438 IPR027417 -
Stsc273188g00002 801 FunFam Probable disease resistance protein At1g61300 154 327 - -
Stsc273188g00002 801 PANTHER DISEASE RESISTANCE PROTEIN RP 57 767 IPR044974 GO:0006952
Stsc273188g00002 801 Pfam Rx N-terminal domain 11 97 IPR041118 -
Stsc273188g00002 801 Gene3D Ribonuclease Inhibitor 538 625 IPR032675 -
Stsc273188g00002 801 Pfam NB-ARC domain 175 403 IPR002182 GO:0043531
Stsc273188g00002 801 Gene3D - 336 423 IPR042197 -
Stsc273188g00002 801 PRINTS Disease resistance protein signature 271 285 - -
Stsc273188g00002 801 PRINTS Disease resistance protein signature 629 645 - -
Stsc273188g00002 801 PRINTS Disease resistance protein signature 374 388 - -
Stsc273188g00002 801 PRINTS Disease resistance protein signature 195 210 - -
Stsc273188g00002 801 Gene3D - 154 327 IPR027417 -
Stsc273188g00002 801 Gene3D Ribonuclease Inhibitor 627 781 IPR032675 -
Stsc273188g00002 801 Gene3D - 8 124 - -
Stsc273188g00002 801 SUPERFAMILY L domain-like 497 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273188g00002 Stsc-Chr273188 8055 11827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273188g00002 192 757 WRKY Transcription Factor Family AT5G45050 22.066 1.71e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273188g00002 - - adu:107472938 1085.09