Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273188g00001 ATGGGTATAGTGGAACAACATGTCAACACTCCAACATTGGAGCGCAATATACCATGGCGAGAAACTAGTTCGTCGTTGCCTTTACGTGTGTGTGGTAGACATGAAGAGAAAGAGGATATCATAGAGCTATTAATGGGGCAACATTCAGAGACTAATAATGTTGATGTGATATCTATTGTTGGGATCGGAGGCTTGGGGAAGACAACACTTGCACAAATGGTTTATGATGATAATAGAGTGAAAAATCATTTTGATATGTTGATGTGGGTTTGTGTGTCTGATGACTTTGATATGAAGATGTTAATACAAAGAATTATCCATGCTGCCTCAAACACAGAGAATGTAGTAGAGGCAAATTCTAGCTTGCAACACATGGTATCTCTTCCCAATGAAAAGTTACATGGGAGGAAGTTCTTACTTGTGTTAGATGATGTTTGGAATGAAAAACCCAACAAATGGGATGAATTCAGACATCACTTGTTGAAGGCAGGGAGCGACACAAAATCAAAAGGGAGCAAAATCATAGTGACCACACGTAGCCACAAAGTTGCTGATATCGTTGGAGGTGGTCTTCTAATTATCAATTTAAAAGAACTTCCTGAGGATGAATGTTGGAAGCTGTTTGTCAAATGTGCATTCCAAGAAGAGAGGGATGAAGAGAAGTATCCAAGGCTGAAGCAAATTGGGGAGCAAATTGTTAACAAATGCAAAGGGATTCCCTTAGCTATGACAACTTTGGGTTGCTTGCTTAAATCAAAATGCCATGATGAAAATGAGTGGAGAAAAATAAGAGATAGTGAGGTGTGGCAACTCGATCAAGAAGAAACTGGCATTTTGCCATCATTGAGATTGAGTTATAATCACTTGCCACCAGGAGTGAAGCAATGTTTTTCATACTGCTCTTGTTTTCCAAAGGATTATGAATATTCGGTTATTGAGTTGATTATGTTCTGGACAGCTCATGGACTCCTCCAACCTATTCATGAAGAGGAGGATGCAGAGGATATTGGGGAGTTGTATATCAAGAAGCTTGTTTCGGCATCCTTGCTTCAATTTGAAAGAGATTTCGGATATCCGATGTCATTTAGTAGACTCAAAATGCATGACCTTGTACATGATCTTGCACAACAAACAATGAAGAAGTCAAGCAAGAAAAAAACTATTTTGCAAGAAACATCTACAGATGAATGGGCCTCCAAGGAATTCAACTATCTGAGAGTTTGGCACTTAGATTGTACGGTATTGAGCTCATTGACTGATGATTGTTTTAACACAATGAAGAAGCACCTGAGATATCTCAATCTAAGAGATTCTGATATTTGGAAAGAATACCCTGATTTCATTTGGAAGCTACACAATTTGCAGTGTTTGAACTTTTGCAGTTATGACAACAGTCATATGCTTACCAAAAACATGAAAAACCTCATCAGTCTTCAATACTTGATTTTGAGTGTCGAAGCTACAAGTTTATCCTCAATGAACATAGGGCGCTTCCAACAACTCAAATTCTTATATCTCCTCAATTGTTCAAAGTTAGTGTCTATACCAAATGCTGTTGGTCGTTTAACTACTTTAAAGAAGTTGATTATTTCTTGGTGTCAAAATTTGGTGAGTTTTGAGGATGAAGAGATAGAAGAAAAGGAACATGTGGCGGTCCATAATTCAAACCTTCAATTATTCGAAATCAGGGCAGCTGGAAAGTTGGAAGGTTTACCTAATTGGCTTGAAAGAGCTACTAAATTGCGATATCTGACAATATCGAGAACAGGAATTAAATCATTTCCCACAAGGTTGCTGATGGCCTCTCTTGAACAACTTTATATCTATAATTGTCCAGAATTGTCATCTCTTCCGAACAACATGGATCAAACTCATAGTCTTCGGTATTTGGAAATATGGGTTTGTCCTACACTAAGTGAAAGGTATAACAAGAAGACAGGTCCAGATTGGAACAAAATTGCTCATATCCCAACTTGCATGATTGATTTCATTCACCAACATCATGAAGATTAA 2013 0.3785 MGIVEQHVNTPTLERNIPWRETSSSLPLRVCGRHEEKEDIIELLMGQHSETNNVDVISIVGIGGLGKTTLAQMVYDDNRVKNHFDMLMWVCVSDDFDMKMLIQRIIHAASNTENVVEANSSLQHMVSLPNEKLHGRKFLLVLDDVWNEKPNKWDEFRHHLLKAGSDTKSKGSKIIVTTRSHKVADIVGGGLLIINLKELPEDECWKLFVKCAFQEERDEEKYPRLKQIGEQIVNKCKGIPLAMTTLGCLLKSKCHDENEWRKIRDSEVWQLDQEETGILPSLRLSYNHLPPGVKQCFSYCSCFPKDYEYSVIELIMFWTAHGLLQPIHEEEDAEDIGELYIKKLVSASLLQFERDFGYPMSFSRLKMHDLVHDLAQQTMKKSSKKKTILQETSTDEWASKEFNYLRVWHLDCTVLSSLTDDCFNTMKKHLRYLNLRDSDIWKEYPDFIWKLHNLQCLNFCSYDNSHMLTKNMKNLISLQYLILSVEATSLSSMNIGRFQQLKFLYLLNCSKLVSIPNAVGRLTTLKKLIISWCQNLVSFEDEEIEEKEHVAVHNSNLQLFEIRAAGKLEGLPNWLERATKLRYLTISRTGIKSFPTRLLMASLEQLYIYNCPELSSLPNNMDQTHSLRYLEIWVCPTLSERYNKKTGPDWNKIAHIPTCMIDFIHQHHED 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273188g00001 670 FunFam Probable disease resistance protein At1g61300 15 189 - -
Stsc273188g00001 670 Gene3D - 16 189 IPR027417 -
Stsc273188g00001 670 Gene3D Ribonuclease Inhibitor 556 646 IPR032675 -
Stsc273188g00001 670 PRINTS Disease resistance protein signature 236 250 - -
Stsc273188g00001 670 PRINTS Disease resistance protein signature 56 71 - -
Stsc273188g00001 670 PRINTS Disease resistance protein signature 520 536 - -
Stsc273188g00001 670 PRINTS Disease resistance protein signature 132 146 - -
Stsc273188g00001 670 Gene3D Ribonuclease Inhibitor 382 555 IPR032675 -
Stsc273188g00001 670 SUPERFAMILY L domain-like 356 638 - -
Stsc273188g00001 670 Gene3D - 198 285 IPR042197 -
Stsc273188g00001 670 Gene3D - 286 378 IPR036388 -
Stsc273188g00001 670 FunFam Probable disease resistance protein At1g63360 286 377 - -
Stsc273188g00001 670 PANTHER DISEASE RESISTANCE PROTEIN RP 33 632 IPR044974 GO:0006952
Stsc273188g00001 670 Pfam NB-ARC domain 39 265 IPR002182 GO:0043531
Stsc273188g00001 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 300 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273188g00001 Stsc-Chr273188 1994 5264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273188g00001 53 541 WRKY Transcription Factor Family AT5G45050 22.563 3.47e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273188g00001 - - adu:107472938 888.641