Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273177g00001 ATGGCTTCATTTAGTTACTTCATGTTGTTGTGCTCTTTTGAGCTTTACATGTTTGATAAATTGCTTCTGGAATCTCATAGCCGAATCCAATGGTTCCAATCAGCTGAGTTTGCACTAAACATTGAAACTCTAGTTAGAGAGCAAAAACTTGAGATTTATGATATGATGATATGGCCAGTACATATTCTACTTGTAATCTATGATTTCCATAACCATGGCTACTTTGTTTCACAAAAAGCCTCAGATTATAGTTTATCTGATCCTCTACTAGCTCACAAGGTTGAGCATAATCAAGAAACAGAATTAGGCCATGGAAACATTCTTAATAGAATGACATTCTCTTGGATCAATTTGTTACTGAAATTGGGTTACTCAAAGCCACTAGCACTTGAAGACATCCCTTCCCTTGCTTCTGAAGATGAAGCTGAGATTGGTTATCAAAAGTTTTCTCATGAATTGGACTCCCTTTTGAGTGAGAGGAGCAATAATGATTCTAGAAACTTGGTTCTGAGGTCGATTGTTCGAGTTTACTTTAAAGAAAACATGTTTATAGCCATTTGTGCGGTTCTCAGGACAATTTGTGCCGTAGCTTCTCCCTCACTTGTCTATTCTTTTGTGAAATATTCCAATTCCATTGAGGAAGACTTGAAATGGGGACTAACCATAGTGGCATGTTTAGTACTCGCCAAGGTGGTTGAGTCTATGTCTCAGAGGCATTGGTTTTTCAACTCAAGGAGGTCAGGGATGAAAATTAGATCAACTTTAATGGCAGCAGTATATCAGAAGCAGTTGAAGCTTTCAATTTGGGGTAGGAGAAGGCATACAACTGGTGAGATTGTGAATTACATCGCGGTTGATGCATACCGAATGGGAGAGTTTCCGTGGTGGTTTCATACAGCCTGGACTTCTGCATTGCAAGTTTTTCTGGCTGTTTGTGTTCTTTTTGGTGTTGTTGGTCTTGGTGCGCTTCCTGGTTTAGTCCCTCTTCTCATTTGTGGAATTATCAATGTCCCATTTGCGAAGATCCTACAAAAATGTCGTTCGGAGTCTATGATTGCACAGGATGAGCGTCTGAGATCAACTTCAGAGATTCTAACTAGCATGAAAATCATAAAGTTACAATCATGGGAGGAAAAGTTCAAGAAACTAGTCGAATCGCTTCGTGCTGAAGAGTTCAAATGCTTGACTAAGGCACAGCTAATGAGAGCTTTTGGTACATTTATTTATTGGATCATGGGAGAACCTGTTAATCTGATTCCAGAAGCACTTTCTGTTCTTATCCAAGTCAAAGTCTCCTTCGATCGCCTCAATGCATTTTTGCTAGATGATGAGATAAAAATTGAGGATGGTAGAAGAAATGCAAAACTGAGTCCTTGTAACAGTGTTGAGATTATTGCAGGAAACTTCAGCTGGAATGAGGAATCAATGCATCCAACTCTGAGGGATGTGAATCTAGAGATAAAATGGGGTCAGAAAATAGCAGTTTGTGGTCCAGTTGGAGCTGGAAAAACAGCTCTCTTATATTCAATTCTTGGAGAGATACCAAAAGTTTCAGGAACTGTTAGTGTAGGTGGAACTTTTGCATATGTTTCCCAAACTCCTTGGATCCAAAGTGGTACCATTCGCAATAATATCCTCTATGGAAAGCCTATGGAGAAAACCAGATATGAATATACCATTAAGGTATGTGCCTTGGATAAGGATATCAATGGATTTAGCCATGGTGATCTCACAGAAATCGGTGAGAGAGGGATCAATATGAGTGGAGGACAAAAACAAAGGATTCAACTTGCTCGAGCTGTCTATAGTGATGCTGATATCTATCTCCTTGATGACCCTTTTAGTGCTGTAGATGCTCATACTGCTTCCATTCTGTTCAATGATTGTGTAAAGACTGCTTTAAGAGGCAAAACTGTTATTCTAGTGACTCATCAAGTTGAATTTCTCTCAGAAGTTGATCAAATCCTGGTAATGGAGAGAGGGAAAATAACTCAATCAGGAAGTTATAAAGATCTTTTGATTGCTGGAACAGCCTTTGAACAACTATTGAATGCTCACAGAGATGCAATCACAGGGGTGAAGAAAAGTAATGAGAAGGAGAGAGTTCTTGAAAATGTAGTTGCAGTTCATCCAGAGGATTCACATGGTTTGGATCTCGCAAACGCTAGAGGTGAAGCTGACATTTCCTCCAAAGTTCAACTAACACAAGAGGAAGAAAAGCAGATTGGTGATATTGGATGGAAGCCATTCTGTGATTACATTCTATTCCCTAAGAGTTCATGGCTTTTATGTTTCTGCATATTAGCACAATTGGCTTTTGTTGGTCTGCAAGCTGCATCAACTTTTTGGCTTGCTTTAGCCATTGAGATACCAAAAGTAACAAGTAGCATCTTAATTGGGGTTTATGCTGTGATTTCCTTTTTAGCTGTTGTATTTACATATCTAAGGTCTTTTCTTGGTGCACACGTTGGTTTGAAAGCTTCTAAGGCTTTCTTCTCTGCTTTCAATGATGCCATCTTCAGTGCTCCTATGTTGTTCTTTGACTCAACACCTGTAGGGAGGATTCTAACCAGAGCTTCATCAGATTTGAGTATTTTGGATTTTGATATGGCTTTCGCAACCTTCTTTGTAATAGGTGAAATAATTGAACTTTCAACAATGATTGGGATCGTCGTTTCAGTCACATGGCAAGTTCTAATTGTTGCCATTCCTGCCCTCGCCGCTTCAAAATATCTTCAGGGCTATTATCAAGCTTCTGCAAGGGAACTTATGAGGATCAATGGAACTACAAAAGCTCCTCTTATGAATTTTACAGCTGAGACATCACTTGGTGTGATCACTATAAGGGCTACCAAGATGATGGACAGATTTTTCAAAAGCTACCTAAAGCTTGTTGACACAGATGCCACACTGTTCTTTCATTCTAATGCTGCCACAGAATGGTTAATTTTAAGGATTGAAGCCTTACAGAATTTGACACTCTTCACTGCAGCTTTGTTGCTTGTTTTACTTCCAAAGGGATATGTGGCCCCTGGTCTTGTAGGAGTTTCGCTGTCTTATGCATTTTCATTGACACTCACCCAAGTTTTTCTGACCAAGTGCTTCTGCAACTTATCAAACTATTTGATCTCTCTTGAAAGAATCAAGCAATTTATAAACATACCATCCGAGCCTAGCGCGATTGTGGAGGACAAAAGGCCACCGCCTTCTTGGCCGTTGAGGGGTCGGATTGAACTCCGATCACTTGAGATTAGATACCGTACAAACGCTCCATTAGTCCTTAAGGGAATAACTTGTACATTTAAAGAAGGGAGTAGAGTGGGAGTGGTAGGAAGAACTGGAAGTGGAAAAACCACCCTTATAAGCGCACTATTCCGCTTAGTTGAGCCTGCAGGAGGTGAAATTCTTGTAGATGGGATCAACATTTGCTCAATTGGGCTGAAAGATTTGAGAATGAAGCTAAGCATCATTCCTCAAGAACCAACACTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTTTAGGTCTATACACTGATGATGAAATATGGAAGGCTCTAGAGAAATGTCAGCTTAAGGCAACAATTAGTGTTCTACCAAATCTCTTGGATTCTTCTGTGAGCAATGAAGGTGAAAACTGGAGTGTAGGGCAGCGCCAACTCTTTTGCCTAGGAAGAGTACTCCTTAAGAGGAACAGAATTCTTGTGCTGGATGAAGCTACTGCCTCCATTGATTCCGCCACCGACGCCATCTTACAACGAGTTATCCGACAAGAATTCTCAGAATGCACAGTTATAACAGTTGCTCACAGAGTACCAACTGTAATAGATAGTGACATGGTCATCGTCCTGTCTTATGGGAAACTGATTGAGTATGATGAGCCTTCAAGGCTTCTGGAGAGAGACTCTTCATTCTATAAGCTGGTATCAGAATATTGGTCCAACTGTAATAGGAATGTTCTCCACAAAGATTAG 3975 0.4018 MASFSYFMLLCSFELYMFDKLLLESHSRIQWFQSAEFALNIETLVREQKLEIYDMMIWPVHILLVIYDFHNHGYFVSQKASDYSLSDPLLAHKVEHNQETELGHGNILNRMTFSWINLLLKLGYSKPLALEDIPSLASEDEAEIGYQKFSHELDSLLSERSNNDSRNLVLRSIVRVYFKENMFIAICAVLRTICAVASPSLVYSFVKYSNSIEEDLKWGLTIVACLVLAKVVESMSQRHWFFNSRRSGMKIRSTLMAAVYQKQLKLSIWGRRRHTTGEIVNYIAVDAYRMGEFPWWFHTAWTSALQVFLAVCVLFGVVGLGALPGLVPLLICGIINVPFAKILQKCRSESMIAQDERLRSTSEILTSMKIIKLQSWEEKFKKLVESLRAEEFKCLTKAQLMRAFGTFIYWIMGEPVNLIPEALSVLIQVKVSFDRLNAFLLDDEIKIEDGRRNAKLSPCNSVEIIAGNFSWNEESMHPTLRDVNLEIKWGQKIAVCGPVGAGKTALLYSILGEIPKVSGTVSVGGTFAYVSQTPWIQSGTIRNNILYGKPMEKTRYEYTIKVCALDKDINGFSHGDLTEIGERGINMSGGQKQRIQLARAVYSDADIYLLDDPFSAVDAHTASILFNDCVKTALRGKTVILVTHQVEFLSEVDQILVMERGKITQSGSYKDLLIAGTAFEQLLNAHRDAITGVKKSNEKERVLENVVAVHPEDSHGLDLANARGEADISSKVQLTQEEEKQIGDIGWKPFCDYILFPKSSWLLCFCILAQLAFVGLQAASTFWLALAIEIPKVTSSILIGVYAVISFLAVVFTYLRSFLGAHVGLKASKAFFSAFNDAIFSAPMLFFDSTPVGRILTRASSDLSILDFDMAFATFFVIGEIIELSTMIGIVVSVTWQVLIVAIPALAASKYLQGYYQASARELMRINGTTKAPLMNFTAETSLGVITIRATKMMDRFFKSYLKLVDTDATLFFHSNAATEWLILRIEALQNLTLFTAALLLVLLPKGYVAPGLVGVSLSYAFSLTLTQVFLTKCFCNLSNYLISLERIKQFINIPSEPSAIVEDKRPPPSWPLRGRIELRSLEIRYRTNAPLVLKGITCTFKEGSRVGVVGRTGSGKTTLISALFRLVEPAGGEILVDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYTDDEIWKALEKCQLKATISVLPNLLDSSVSNEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFSECTVITVAHRVPTVIDSDMVIVLSYGKLIEYDEPSRLLERDSSFYKLVSEYWSNCNRNVLHKD 1324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273177g00001 1324 Pfam ABC transporter 480 614 IPR003439 GO:0005524
Stsc273177g00001 1324 Pfam ABC transporter transmembrane region 183 413 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc273177g00001 1324 Pfam ABC transporter transmembrane region 767 1021 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc273177g00001 1324 SUPERFAMILY ABC transporter transmembrane region 757 1057 IPR036640 GO:0005524|GO:0016020
Stsc273177g00001 1324 FunFam ABC transporter C family member 5 726 1058 - -
Stsc273177g00001 1324 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 106 1310 - -
Stsc273177g00001 1324 FunFam Multidrug resistance protein associated1 441 705 - -
Stsc273177g00001 1324 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 183 413 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc273177g00001 1324 CDD ABC_6TM_ABCC_D2 761 1052 IPR044726 GO:0140359
Stsc273177g00001 1324 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 765 1040 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc273177g00001 1324 Gene3D ABC transporter type 1, transmembrane domain 727 1058 IPR036640 GO:0005524|GO:0016020
Stsc273177g00001 1324 Pfam ABC transporter 1094 1242 IPR003439 GO:0005524
Stsc273177g00001 1324 FunFam ABC transporter C family member 10 165 412 - -
Stsc273177g00001 1324 Gene3D - 1060 1311 IPR027417 -
Stsc273177g00001 1324 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 464 685 IPR003439 GO:0005524
Stsc273177g00001 1324 Gene3D - 437 709 IPR027417 -
Stsc273177g00001 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 684 IPR027417 -
Stsc273177g00001 1324 Gene3D ABC transporter type 1, transmembrane domain 170 436 IPR036640 GO:0005524|GO:0016020
Stsc273177g00001 1324 SMART AAA_5 489 662 IPR003593 GO:0016887
Stsc273177g00001 1324 SMART AAA_5 1103 1288 IPR003593 GO:0016887
Stsc273177g00001 1324 CDD ABCC_MRP_domain2 1075 1295 - -
Stsc273177g00001 1324 CDD ABC_6TM_ABCC_D1 183 436 IPR044746 GO:0140359
Stsc273177g00001 1324 ProSitePatterns ABC transporters family signature. 587 601 IPR017871 GO:0005524|GO:0016887
Stsc273177g00001 1324 SUPERFAMILY ABC transporter transmembrane region 170 413 IPR036640 GO:0005524|GO:0016020
Stsc273177g00001 1324 FunFam ABC transporter C family member 3 1060 1311 - -
Stsc273177g00001 1324 CDD ABCC_MRP_domain1 462 662 - -
Stsc273177g00001 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1067 1310 IPR027417 -
Stsc273177g00001 1324 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1079 1311 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273177g00001 Stsc-Chr273177 1326 7205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273177g00001 462 708 Calmodulin-binding Proteins AT2G36910 27.341 1.29e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273177g00001 - - gmx:100813711 1953.72