Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273168g00003 ATGGGTATGATAGTGGAGGTTGAAACCGGAGACGAGGACGACGCCGTTTTGGTCCCGCCGCCGAATTTCTCGATGGTGGAGGACTGCATTTTCCGATCCAGCTTCCCCAGCCCTTCCCATTTTCCTTTCCTTCAAACCCTAAACCTTCGATCCGTCATATACTTGTGTCCAGAGCCCTATCCAGAAGAAAATCTGGAGTTTCTTCGATCGCAGAACATTCGGCTCTTTCAATTCGGAATCGAGGGGAAGACGGAGGTTTCTTTACCCATTCTCAGGGATTCCATCATGGAGGCTCTGAAAGTATTAATTGATGTGAGAAATCACCCAGTTTTGATCCATTGCAAAAGAGGGAAGCATAGAACAGGTTGCCTTGTTGGCTGCTTGAGAAAATTGCAGAATTGGTGCCTATCTTCTGTGTTCGAGGAGTACCAACGATTTGCGGGTGCTAAATCCAGGAATGGTGATTTAACCTTCATAGATAAGTTTGACATCGTTAGCCTGCGGCAGTGCCTTTACAGTATAATCTACCAGTACCAAGGATACGGTTCGAAGAAGCGGCGATTGTTGTACAAAGATGAGAACTTGCAGAAGCCCCGACTGGCATCGTTTTAG 612 0.469 MGMIVEVETGDEDDAVLVPPPNFSMVEDCIFRSSFPSPSHFPFLQTLNLRSVIYLCPEPYPEENLEFLRSQNIRLFQFGIEGKTEVSLPILRDSIMEALKVLIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYQRFAGAKSRNGDLTFIDKFDIVSLRQCLYSIIYQYQGYGSKKRRLLYKDENLQKPRLASF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273168g00003 203 FunFam probable tyrosine-protein phosphatase At1g05000 16 166 - -
Stsc273168g00003 203 CDD PFA-DSP_Siw14 17 163 - -
Stsc273168g00003 203 PANTHER TYROSINE-PROTEIN PHOSPHATASE 14 175 - -
Stsc273168g00003 203 Gene3D Protein tyrosine phosphatase superfamily 16 166 IPR029021 -
Stsc273168g00003 203 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791
Stsc273168g00003 203 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Stsc273168g00003 203 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Stsc273168g00003 203 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Stsc273168g00003 203 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 149 IPR029021 -
Stsc273168g00003 203 ProSiteProfiles Dual specificity protein phosphatase domain profile. 22 173 IPR020422 GO:0006470|GO:0008138
Stsc273168g00003 203 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Stsc273168g00003 203 Pfam Tyrosine phosphatase family 17 165 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273168g00003 Stsc-Chr273168 12377 14067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273168g00003 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 68.020 8.53e-103 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273168g00003 K18045 - gmx:100785746 360.147