Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273166g00001 ATGGAAAGTAGTCATCATTTCCATCATCATCAACCACAACAATACCCACCGCCACAACAACATCATAGTATTAGTGCAACAACTAGTGGAGGAGGAGGAGTTAATAACGTTGTTGGTGGTGTTGATGTGACAGGAGATAGTAGGTTCCCCCAATGGAGCATCCAAGAAACGAAGGAGTTCCTAATGATCCGTGCGGAGCTTGATCAGACTTTCATGGAGACAAAGAGGAACAAGCAGCTCTGGGAAATCATCTCCAACACCATGAAGGAAAAAGGTTTCAATAGAAGCGCTGAGCAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGTTACAAGGGATGTGAAACGATGGAGGCAGAAGCAATGAGGCAGCAATTCCCATTCTACAACGAGCTTCAAGCTATTTTCACGGATAGAATGCAGAGGATGCTTTGGGCTGAAGCCGAAGGCGGCGGCGGAGGAGGAGGTTCATCTAATAATAAGAAGAAAGCGGCAGTGCAGGTTTCATCCGAGGAGGAAGAAGAGGAAGAGAGCGAATTAGGAGATTCACAACAAAAGATTAGAAAGAAAAGGATAATAAAGAAGGTTAAGAGGATGGAAAATAGTAGTGATAGTAATAATTTGAAGCGTTTGAAGGGGACTCTGGAGGAGTTTATGAGGCAACAGATGCAGATGGAGGCGCAATGGATGGAGGCGTTCGAGGCGAGGGAGAATGATCGGAGGTTGAAGGAGTTGGAATGGCGGCAAACAATGGAGGCTTTGGAGAATCAGAGGATATTGATGGAGCAGAGATGGAGGGAGAGTGAAGAACAAAGGAGGATTAGGGAAGAAGCTAGGGCTGATAAGAGAGATGCTCTTATCACTTCACTTCTCAACAAGCTTTCAAGACAAGATCATCAATAA 903 0.4529 MESSHHFHHHQPQQYPPPQQHHSISATTSGGGGVNNVVGGVDVTGDSRFPQWSIQETKEFLMIRAELDQTFMETKRNKQLWEIISNTMKEKGFNRSAEQCKCKWKNLVTRYKGCETMEAEAMRQQFPFYNELQAIFTDRMQRMLWAEAEGGGGGGGSSNNKKKAAVQVSSEEEEEEESELGDSQQKIRKKRIIKKVKRMENSSDSNNLKRLKGTLEEFMRQQMQMEAQWMEAFEARENDRRLKELEWRQTMEALENQRILMEQRWRESEEQRRIREEARADKRDALITSLLNKLSRQDHQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273166g00001 300 Gene3D - 52 113 - -
Stsc273166g00001 300 CDD GT1 50 115 - -
Stsc273166g00001 300 PANTHER FI21293P1 8 297 - -
Stsc273166g00001 300 MobiDBLite consensus disorder prediction 13 34 - -
Stsc273166g00001 300 MobiDBLite consensus disorder prediction 147 186 - -
Stsc273166g00001 300 Coils Coil 208 228 - -
Stsc273166g00001 300 FunFam Zinc finger and SCAN domain-containing 20 52 113 - -
Stsc273166g00001 300 Pfam Myb/SANT-like DNA-binding domain 51 135 IPR044822 -
Stsc273166g00001 300 Coils Coil 251 271 - -
Stsc273166g00001 300 ProSiteProfiles Myb-like domain profile. 52 108 IPR001005 -
Stsc273166g00001 300 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273166g00001 Stsc-Chr273166 15091 16519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273166g00001 38 296 Trihelix Transcription Factor Family AT2G38250 57.143 7.41e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc273166g00001 Myb_DNA-bind_4 7.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273166g00001 - - aip:107637926 397.127