Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273163g00002 ATGTTGCAGATAGAGTTGGTGTGGGAGAACATTTCAACCCTTTCGTTACTTGGAATGGAAAGGCATCTGAATCAAGAGTTGTTGCTTCAAGGTTCTTGGGAAGATTCAAGGTTCAAGAAGGAGCGTCCAGAGGTGCTGCTGTTGAAGCGAGTTTTGCACTTTAAAATCAAGAACCTTAAAACAAGGGTTGAAAATATTGGTGGGAGAGAGTTTGCTGAGTCCTTAGCCCCTAATGTGCAGAAGTTGTTGGAAGGATTTGCCTTCTCTCACTGCACTACTTGCAAAGCCCAATTTCATCTTAGGGTTGAATTGTTTGAGGACAATTCTTGGCGTAAAGCAAAGTTTAGACTCTTTGTGGCAAGAGACGTTTTCCTTGTTTTTCTGGCTGTACAGACCGTGATTGCAGGTATAGGCGGCTTTGCATACATCATGGACAAGGATGGGAACTTCAGGAACTCTTTTGATGATGGCTGGGATAGGATACTGTCAAAAACATCCTATACCATTCTATTATTGTATTGTAATGACCCCAGAATGGCTGGTTGTCAGAATTGTTGTTATGGATGGGGCATCCTTGATTGCTTTCCTGCATCAATGGAGGCTTGCTTTGCCCTTGTGGTGGTTTTTGTAGTCATCTTTGCATTGTGTTTGCTACGCTTATACAGGAAGAATCCTGATGTTGTCAATGTGTATGGATGGGCAGATTGGATGGCACAACTGTTGGATGAACGAGACCTTGGTGTTTTGACATCATCTATGAGTCTTCTTGTTGCGAACCAGGATATCCCACAAGAATACACTTATTACAGTATCCCATCTCCCTGGCTTCAGTGTCAGGATGATTATCCCGCAGATCCAAGACTATCACAGGAAAATGGGGCTTTGGCTACAATAAATTCTCAGCCTCCCCCTGCAGATATTCTTAGTGATCTCTTAGGTCCGTTGGCCATCGAAGGTCCCCTCAGTAGCAGCGTACATCCTCAACCAAGCACAACTTTTGAATTGGAAGTAACTGCGGTTGAAGCCACTGCAATAGTACCTGCAGATCCAAGACTATCACAGGAAAATGGGGCTTTGACTACAGTAAATTCTCAGCCTCCCCCTGCAGATATTCTTAGTGATCTCTTAGGTCCGTTGGCCATCGAAGGTCCCCTCAGTAGCAGTGTACATCCTCAACCAAGCACAACTTTTGAATTGGAAGGAACTGCGGTTGAAGCCGCTGCAATAGTACCTGCAGGGGTGCAGGCCAATTCAGTGCAGCCAATTGGAAATATTTCTGAAAGATTTCAAGCTTTGTGCGTGAAAGATAGTGGTGTTCTATATGAGGATCCTTATATTCAGATTGGCGTTAAGGCAAAATGCAGAGCTCATCATGGGCATATGGTTCTTTTCTTGGGAAACAAGAATGCTGCTCCGTGTCTTTGTTCAAGCTATCATGTTGCCTCCCACCCATTTCAAGATGGAGCTCTCACTAGTACCGGAAACTATACCTCCCGTTCATAG 1503 0.4438 MLQIELVWENISTLSLLGMERHLNQELLLQGSWEDSRFKKERPEVLLLKRVLHFKIKNLKTRVENIGGREFAESLAPNVQKLLEGFAFSHCTTCKAQFHLRVELFEDNSWRKAKFRLFVARDVFLVFLAVQTVIAGIGGFAYIMDKDGNFRNSFDDGWDRILSKTSYTILLLYCNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFALCLLRLYRKNPDVVNVYGWADWMAQLLDERDLGVLTSSMSLLVANQDIPQEYTYYSIPSPWLQCQDDYPADPRLSQENGALATINSQPPPADILSDLLGPLAIEGPLSSSVHPQPSTTFELEVTAVEATAIVPADPRLSQENGALTTVNSQPPPADILSDLLGPLAIEGPLSSSVHPQPSTTFELEGTAVEAAAIVPAGVQANSVQPIGNISERFQALCVKDSGVLYEDPYIQIGVKAKCRAHHGHMVLFLGNKNAAPCLCSSYHVASHPFQDGALTSTGNYTSRS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273163g00002 500 Gene3D - 417 492 - -
Stsc273163g00002 500 Gene3D - 213 279 IPR011989 -
Stsc273163g00002 500 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 84 215 - -
Stsc273163g00002 500 SUPERFAMILY Clathrin adaptor appendage domain 417 473 IPR013041 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273163g00002 Stsc-Chr273163 11200 16173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273163g00002 67 202 C3H Transcription Factor Family AT1G11020 65.217 1.01e-61 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273163g00002 - - lang:109345289 237.269