Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273159g00003 ATGGGTATCTGCTTTTCATCCACCAAGGTAGTTGGCTCCAACAGCAACAACAACAATCACCATGGGAACGGAAACCCCGCCACCACCGTTAACCGGAACAGGAAACGGAATACAACCACTCAATCAACGGCGACCAACCCGGCGGCGGCGGTGGTGAGCGTCCACAACGATCAGCGGAGGAAGGACGATGAAAAGAAGAAGACGAAGAAGAATAATAATAATCAGCATTCGCAGAAGCCAAAGACGACGACGATAACGGCGAGAAAGCAAGTGCCTTGCGGAAAGCGAACGGATTTCGGTTACGAGAAGAACTTTGAGAAGAGATTCACGCTCGGGAAGCTTTTGGGTCATGGCCAATTCGGTTACACCTATGTTGGTATTGATAAGGCCAATGGGGATCGTGTTGCCGTTAAGAGGCTCGAGAAGGCCAAGATGGTACTACCCATAGCTGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGAACTTACCGGCCATGAAAACGTGGTCCAGTTCTATAATGCTTTTGAAGATGATTCATTCGTGTACATAGTTATGGAGTTATGTGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGCCGTTACACAGAAAAAGACGCAGCAGTGATTGTGAGACAGATGCTCAAAGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACATCGGGACATGAAACCAGAGAATTTTCTTTTCAAGTCAACCAAAGAAGATTCACCTCTAAAGGCCACAGATTTCGGGTTGTCCGATTTCATAAAACCTGGTAAGAGGTTTCAAGATATTGTTGGCAGTGCTTACTACGTTGCACCAGAAGTGCTAAAAAGAAAGTCGGGCCCTGAATCAGATGTGTGGAGTATTGGTGTGATCACTTACATTTTGCTTTGTGGGAGACGCCCATTTTGGGATAAGACTGAAGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCTGATTTCCGCCGCAAACCATGGCCATCCATAAGCAATGCTGCCAAAGATCTGGTGAAGAAATTATTGGTAAAGGATCCTCGAGCAAGATTAACTGCTGCCCAGGCTTTATGTATGTATACAACTGTTTGA 1113 0.46 MGICFSSTKVVGSNSNNNNHHGNGNPATTVNRNRKRNTTTQSTATNPAAAVVSVHNDQRRKDDEKKKTKKNNNNQHSQKPKTTTITARKQVPCGKRTDFGYEKNFEKRFTLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKAKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSFVYIVMELCEGGELLDRILAKKDSRYTEKDAAVIVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPSISNAAKDLVKKLLVKDPRARLTAAQALCMYTTV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273159g00003 370 Gene3D Transferase(Phosphotransferase) domain 1 101 369 - -
Stsc273159g00003 370 SUPERFAMILY Protein kinase-like (PK-like) 103 365 IPR011009 -
Stsc273159g00003 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Stsc273159g00003 370 FunFam CDPK-related kinase 1 102 194 - -
Stsc273159g00003 370 PANTHER SERINE/THREONINE-PROTEIN KINASE 83 364 - -
Stsc273159g00003 370 FunFam calcium-dependent protein kinase 28-like 195 369 - -
Stsc273159g00003 370 SMART serkin_6 109 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273159g00003 370 MobiDBLite consensus disorder prediction 55 71 - -
Stsc273159g00003 370 Pfam Protein kinase domain 110 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273159g00003 370 ProSiteProfiles Protein kinase domain profile. 109 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273159g00003 370 MobiDBLite consensus disorder prediction 12 87 - -
Stsc273159g00003 370 MobiDBLite consensus disorder prediction 12 52 - -
Stsc273159g00003 370 CDD STKc_CAMK 108 364 - -
Stsc273159g00003 370 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273159g00003 Stsc-Chr273159 12207 14960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273159g00003 1 365 EF-hand Containing Proteins AT2G17890 70.811 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc273159g00003 Pkinase 1.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273159g00003 K13412 - gmx:100817249 549.666