Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273159g00001 ATGGATACCTGCAATTTCTCCAAAACCTCATCCCTTCCCCAAGATTCACCCTCCGCCACTCCCTCTCCCCCCTCTTTCCCTCCTCCTGCCCTCCCTTCTAACCGATCCCATCACCACCCCAGAGAAAAGGGGCAAGTCGAAGCATCGCAGGATCCCGCTGCCGCAAGGAAGGTTCAGAAGGCTGACCGCGAGAAACTCCGCCGCGATCGATTAAACGACCACTTCCACGACTTGGCCAACACTTTAGATCCTGATAGGCCAAGGAATGACAAAGCAACCATCCTCACTGATACAATTCAAATGCTTAAGGATTTAACTGCTCAAGTTAATAGGTTGAAAACTGAGCATAAAGCTCTTTCCGATGAGTCTCGCGAACTAATGCAAGAGAAGAATGAACTCAGGGAAGAGAAGGCATCCTTGAAATCAGATATAGATAACCTTAATTCCCAGTACCAGCAGAGGGCCAGAATGATGTTTCCATGGACTGCAATCGACCACTCCGTCGTAATGGCTCCGCCACCTTATTCATATCCGGTTCCTATACCTATCCCTCCTGCTCCCGTTCCAATTCACCCGACTCTTCAACCCTTTCCGTATTTTGGAAATCAAAATCCTGCTCACATTGCTACTCCATGTTCAACATATGTTCCATTCTCTGCTCCAACTAATGCCGCGGTTGAGTTGCCCTCAGCTCAGTATGCTTCCGCATCTCATGTGCCTAGCCGAAAGGATTCTCGGAGCAAGTCACCAGCTCATAGAAGGATCAGCGATGCAGACAGGTGTGCCGAGTCTCATGATGTGGCTACAGAGCTTGAACTTAAGATGCCTGGATCATCAACACAGGAGGAATCTACTTCCGGAGGAACAAAGAAGGCCAGGCATTCAGTGAGGAAGGATAGAGTCGTCACCCAAGGGAGTGCTTCAAGCCGGCATTCTACATCTCATGGACTTCAAGATAGCTCCAACAGTGTCGGTGACATCCCAAAGGCTGATAGTTGA 999 0.4935 MDTCNFSKTSSLPQDSPSATPSPPSFPPPALPSNRSHHHPREKGQVEASQDPAAARKVQKADREKLRRDRLNDHFHDLANTLDPDRPRNDKATILTDTIQMLKDLTAQVNRLKTEHKALSDESRELMQEKNELREEKASLKSDIDNLNSQYQQRARMMFPWTAIDHSVVMAPPPYSYPVPIPIPPAPVPIHPTLQPFPYFGNQNPAHIATPCSTYVPFSAPTNAAVELPSAQYASASHVPSRKDSRSKSPAHRRISDADRCAESHDVATELELKMPGSSTQEESTSGGTKKARHSVRKDRVVTQGSASSRHSTSHGLQDSSNSVGDIPKADS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273159g00001 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 55 105 IPR011598 GO:0046983
Stsc273159g00001 332 Pfam Helix-loop-helix DNA-binding domain 56 105 IPR011598 GO:0046983
Stsc273159g00001 332 CDD bHLH_AtILR3_like 60 134 - -
Stsc273159g00001 332 PANTHER TRANSCRIPTION FACTOR BHLH121 32 330 IPR044579 GO:0003700|GO:0006879
Stsc273159g00001 332 Gene3D - 53 130 IPR036638 GO:0046983
Stsc273159g00001 332 SMART finulus 61 111 IPR011598 GO:0046983
Stsc273159g00001 332 MobiDBLite consensus disorder prediction 241 270 - -
Stsc273159g00001 332 MobiDBLite consensus disorder prediction 301 332 - -
Stsc273159g00001 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 123 IPR036638 GO:0046983
Stsc273159g00001 332 MobiDBLite consensus disorder prediction 1 16 - -
Stsc273159g00001 332 Coils Coil 95 150 - -
Stsc273159g00001 332 MobiDBLite consensus disorder prediction 17 34 - -
Stsc273159g00001 332 MobiDBLite consensus disorder prediction 56 72 - -
Stsc273159g00001 332 MobiDBLite consensus disorder prediction 233 332 - -
Stsc273159g00001 332 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273159g00001 Stsc-Chr273159 7105 9408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273159g00001 53 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 55.508 2.60e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc273159g00001 HLH 4.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273159g00001 - - ahf:112747741 525.398