Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273100g00001 ATGGCAGAAGCAGCAGCTATAGAGCATGCTCATGATCATCATCACCATGAATGCACTCATACCAGATATCCCAATCTATGTGACGAAACCTTGAAGGAGTTGATGATGAGTTCAGGGAAGAATGATCATGAAAATGTTGATATCATTCTGGCTCTTGTAAACAAAACCATGTATGAAACCAACTTGCCAACTTCATATTTTGCTTCGTTTGAGACTGAGGATGATGATGTTCAACAAGACAAATCATCTTCTTCATCAGTCCTAGGCTATTGTCAAGAGCTATTGGGCATGTCAATGAAGAGGTTGGACCAATCCATGAAAGCACTCACCAACCCTACAAGAAACAAGCAGGACATCCAAACATGGCTTAGCGCCTCCCTAACTTTCCAACAAACTTGCAGTGACTTCGCAAAATCACACGCCGCCGCCACCGCAGCCGTAGAAACCATTTCCAAGAAAATGGACTATCTCTCCGCCTTAGCCAGCAACTCACTAGCCCTTGTTAACCGAATCACTTCTGCCACCGCCGCAACTGCAACCAAAGATGAATTTCCCGAATGGGTTTCTTCACAAGGAAGAAAACTCCTCCAGGGAGCGGCGCCCATAAAAGCGAACGCGGTGGTTGCGCAAGACGGTTCGGGGAACTACAAGACGATATCTGAGGCGATTGCGGCGGCTACAGGCGGAAGGTTTGTGATTTATGTGAAAGCAGGGACTTACAAGGAAAAAATTCGGGCGCACAAGAACGGTATAACGTTGATTGGAGAGGGTAAATATTCTACCGTTATTGTTGGCAGTGCTAGCGTCAGGGGTGGAGCTTCCTTGCCTGACACCGCCACATTCACAATATTTGGGGATGGATTCATTGCAAAAGACATAGGGTTCCACAACAACGCCGGCCCTCAAGGCGAACAAGCCGTGGCTCTCTACATAGCTTCAGACCGCGCCGTCCTCTTCCGCTGCAGCATCGCCGGCTACCAAGACACCATCTACGCCCACTCCCTCCGCCAATTCTACAGAGAATGCGACATCTACGGCACCATCGACTTCATCTTCGGCAACGCCGCCGCCGTCTTCCAATCCTGCAACATCATGCTCCGCCGCCCCGCCCACGGCGGCTCCAACGCCATCCTCGCCAGCGGCAGAACCGATCCCGGACAAAACACGGGCTTCTCGCTTCACAAGTGCGCGATCTCGCCGAGCTCGGATCTTTCTCCGGTGAAACACTCCGTGCAGTCTTTCCTTGGGAGGCCATGGAAGGAATATTCTAGGGCTGTTGTGATAGGGTGTACCATTGATGACGTCATCGCGCCGCAGGGTTGGGAGCAGTGGCCTGGCTATGGAAGCTCGGTGTTGAAGTCGTTGTATTTTGGTGAGTATGGTAATTCAGGAGCTGGTGCTGGAACTTCAGGCAGGGTTCGTTGGCCTGGTTATCATGTCATGGGTGCCATGGACGCTGGTAAGTTCACAGTTGGTAGCTTGATTGGCGGCGGTTCTTGGATTCCGTCCTCCGGAGTTGCTTTCATCTCCGGCCTCTAA 1539 0.512 MAEAAAIEHAHDHHHHECTHTRYPNLCDETLKELMMSSGKNDHENVDIILALVNKTMYETNLPTSYFASFETEDDDVQQDKSSSSSVLGYCQELLGMSMKRLDQSMKALTNPTRNKQDIQTWLSASLTFQQTCSDFAKSHAAATAAVETISKKMDYLSALASNSLALVNRITSATAATATKDEFPEWVSSQGRKLLQGAAPIKANAVVAQDGSGNYKTISEAIAAATGGRFVIYVKAGTYKEKIRAHKNGITLIGEGKYSTVIVGSASVRGGASLPDTATFTIFGDGFIAKDIGFHNNAGPQGEQAVALYIASDRAVLFRCSIAGYQDTIYAHSLRQFYRECDIYGTIDFIFGNAAAVFQSCNIMLRRPAHGGSNAILASGRTDPGQNTGFSLHKCAISPSSDLSPVKHSVQSFLGRPWKEYSRAVVIGCTIDDVIAPQGWEQWPGYGSSVLKSLYFGEYGNSGAGAGTSGRVRWPGYHVMGAMDAGKFTVGSLIGGGSWIPSSGVAFISGL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273100g00001 512 NCBIfam pectinesterase inhibitor domain 16 171 IPR006501 GO:0004857
Stsc273100g00001 512 ProSitePatterns Pectinesterase signature 2. 344 353 IPR033131 -
Stsc273100g00001 512 SMART PMEI_2 9 167 IPR006501 GO:0004857
Stsc273100g00001 512 Gene3D Invertase/pectin methylesterase inhibitor family protein 15 173 IPR035513 -
Stsc273100g00001 512 FunFam Pectinesterase 199 512 - -
Stsc273100g00001 512 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 17 172 IPR035513 -
Stsc273100g00001 512 SUPERFAMILY Pectin lyase-like 201 511 IPR011050 -
Stsc273100g00001 512 CDD PMEI-like_3 18 171 - -
Stsc273100g00001 512 Pfam Plant invertase/pectin methylesterase inhibitor 17 167 IPR006501 GO:0004857
Stsc273100g00001 512 Gene3D - 199 512 IPR012334 -
Stsc273100g00001 512 Pfam Pectinesterase 205 497 IPR000070 GO:0030599|GO:0042545
Stsc273100g00001 512 ProSitePatterns Pectinesterase signature 1. 227 246 IPR018040 -
Stsc273100g00001 512 PANTHER PECTINESTERASE 18 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273100g00001 Stsc-Chr273100 3027 8044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273100g00001 91 512 Carbohydrate Esterase AT2G45220 48.821 2.89e-132 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273100g00001 K01051 - gmx:100795439 652.129