Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273093g00001 ATGGCTCAACAACTTCACCCCAATCATCTCACATGGATTCACCTTCACCTCATCCTCCTCTTCCTCCTCCATGGTAGTCATAGTGTAGTTCATGCACAAGGCTCCATGGAGCCAGTTCCCACAGACATCTCCCACCATAGATGGCAACCTTCTTTTGCAATCACCATAGGTGCCATCATCTGTGCCTTCCTCTTCATGGGGATCATCACAATTTACCTCCGTAACTGTACTGGATCACACATCAACAACAGAAACCAAACCAACCCAACCTCCTCAGAATGCTCATGTTCTTGTGCACAAGGGATCACCAAGGAACTCCTCAACACTTTCCCAATCCTCTTCTACCCCACCATCAAGGACCTCAAGATAGGTAAAGGATCACTAGAATGTGCAATTTGCTTAACCGATTTCAAGGACTACGACACACTCAGGCTTCTACCAAAGTGTAACCACGTCTTCCACCCTCAATGTATAGACTCATGGCTATGTTCCCACGTCACATGCCCCGTTTGTCGCGCGAATCTGAACCAAGATGCATGTGAAACTGCCATAACTGTTCCGACCCATTTGAGCACTCCCCAAATGGGTGAAGAAAGTCCAGAACTTGAAGCTGAAAACAACGTTGGTGAAGAGAACAACGTGGTGGAGCAAAACCATGTCGAGAAAAACGAGGTTTTGAGCAGCAACGATGGTGATGGAGAAGTTGATGGTGGAAGTGATGGGGTTGTGTCAAAACCGAAGGTTTTGAGGTCAAGTTCAACGGGACACACGGTTGTGGAGCAAGTGAAGAGCGAGGAGAGGTACACACTGAGGTTACCAGAAGATGTAAGGAGGTACATTCTGGTTAACCATGGTGAAACGGTGCAGCGTTCAGCCAGCTACAACAACAACAATGGCAACAACGTGGTGAGAGGGGTGTGTTGGAGTGACAGTGAAGAGAGCAGCGGTGGTGNNNNNNNNNNAGTGAAGGTAGAGAGGTGGGTGCTTTGTAGCCATGGCTGA 1002 0.478 MAQQLHPNHLTWIHLHLILLFLLHGSHSVVHAQGSMEPVPTDISHHRWQPSFAITIGAIICAFLFMGIITIYLRNCTGSHINNRNQTNPTSSECSCSCAQGITKELLNTFPILFYPTIKDLKIGKGSLECAICLTDFKDYDTLRLLPKCNHVFHPQCIDSWLCSHVTCPVCRANLNQDACETAITVPTHLSTPQMGEESPELEAENNVGEENNVVEQNHVEKNEVLSSNDGDGEVDGGSDGVVSKPKVLRSSSTGHTVVEQVKSEERYTLRLPEDVRRYILVNHGETVQRSASYNNNNGNNVVRGVCWSDSEESSGGXXXXVKVERWVLCSHG 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273093g00001 333 FunFam E3 ubiquitin-protein ligase ATL6 90 178 - -
Stsc273093g00001 333 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Stsc273093g00001 333 CDD RING-H2_EL5-like 129 172 - -
Stsc273093g00001 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 179 IPR013083 -
Stsc273093g00001 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 37 267 - -
Stsc273093g00001 333 SMART ring_2 130 171 IPR001841 -
Stsc273093g00001 333 SUPERFAMILY RING/U-box 129 178 - -
Stsc273093g00001 333 MobiDBLite consensus disorder prediction 215 229 - -
Stsc273093g00001 333 MobiDBLite consensus disorder prediction 191 249 - -
Stsc273093g00001 333 Pfam Ring finger domain 129 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273093g00001 Stsc-Chr273093 1283 3207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273093g00001 8 281 Rapid Response to Elicitors AT3G05200 37.091 7.79e-57 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273093g00001 K10664 - gmx:100782532 291.582