Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273053g00004 ATGTCAATAAATTATACCTCTCAACATCAAGAAGACGATTCACTAAATGCTGATCTTCCTACTGTCCCTCTAATATGGATTCAACAGAGCACTAATAATTTTTCAGATTCTTGCAAATTAGGAGAAGGTGGATTTGGTCCTGTTTATAAGGGAAGTTTACCAGATGGGACAGAGGTTGCTATCAAAAGACTCTCACAAGCATCTAGTCAAGGTATAGATGAGTTTAAGAATGAAGTAATCTTCATAGCCAAACTGCAACATAGGAACCTTGTGAGACTGTTGGGTTGTTGTGTTGAGAAAAATGAAAAGCTACTTGTATACGAGTACATGTCAAATTCTAGCCTTGCCTTTCACCTGTTCGATGAGGAGAAAAGAAAGCAACTAGATTGGAAGTTACGTTTGAATATTATTAATGGACTTGCAAAAGGACTTCTATATCTTCACGAAGATTCTAGACTCAGAATAATTCATCGAGATTTGAAAGCTAGCAATGTTCTACTAGATAATGATATGAATCCAAAGATTTCAGATTTCGGAATGGCAAGAGCATTTGAAAATGGCCAAAATCAAGAAAATACCACAAGGGTTATGGGCACCTATGGATATATGGCTCCAGAATATGCTATGGAAGGATTATATTCAGTAAAATCTGACGTTTTTAGTTTTGGAGTTCTTCTGCTAGAAATTATTAGCGGCAAAAAGAACAATGGATTCTATTTTTCAGAACCTGGTCAAAGTCTTCTTGTATATAGTTGGAGACTATGGTGTGAAGGAGAATGTTTGAAGCTGGTAGATCCTATACTAGAAAATACATACACAAGAAATGAAGTTAAAAGGTGTATTCAAATTGGTTTATTGTGTGTACAAGAAGATGCAGTAGATCGACCAACAATGTCCACAGTTGTTGTTATGCTTGCAAGTGACACAATGACTCTTCCTAATCCTAACCATCCTGCATTTTGCGTTGGAAGAAAGATCAGAGAACAAGAACCAACATCAAATGCCTCTAATGAAGATCCTTCTATCAATAATATAACAATTTCAAGTATTTTACCTAGGTAA 1062 0.3569 MSINYTSQHQEDDSLNADLPTVPLIWIQQSTNNFSDSCKLGEGGFGPVYKGSLPDGTEVAIKRLSQASSQGIDEFKNEVIFIAKLQHRNLVRLLGCCVEKNEKLLVYEYMSNSSLAFHLFDEEKRKQLDWKLRLNIINGLAKGLLYLHEDSRLRIIHRDLKASNVLLDNDMNPKISDFGMARAFENGQNQENTTRVMGTYGYMAPEYAMEGLYSVKSDVFSFGVLLLEIISGKKNNGFYFSEPGQSLLVYSWRLWCEGECLKLVDPILENTYTRNEVKRCIQIGLLCVQEDAVDRPTMSTVVVMLASDTMTLPNPNHPAFCVGRKIREQEPTSNASNEDPSINNITISSILPR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273053g00004 353 Pfam Protein tyrosine and serine/threonine kinase 38 304 IPR001245 GO:0004672|GO:0006468
Stsc273053g00004 353 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 348 - -
Stsc273053g00004 353 Pfam Domain of unknown function (DUF3403) 307 353 IPR021820 GO:0004674
Stsc273053g00004 353 SMART serkin_6 34 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273053g00004 353 ProSiteProfiles Protein kinase domain profile. 34 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273053g00004 353 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 109 - -
Stsc273053g00004 353 PIRSF ILK 3 317 - -
Stsc273053g00004 353 Gene3D Transferase(Phosphotransferase) domain 1 110 314 - -
Stsc273053g00004 353 CDD STKc_IRAK 40 305 - -
Stsc273053g00004 353 SUPERFAMILY Protein kinase-like (PK-like) 19 321 IPR011009 -
Stsc273053g00004 353 Gene3D Phosphorylase Kinase; domain 1 2 109 - -
Stsc273053g00004 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Stsc273053g00004 353 FunFam Liguleless narrow1 110 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273053g00004 Stsc-Chr273053 16367 18277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273053g00004 11 348 Receptor kinase-like Gene Family AT4G23150 55.621 7.27e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc273053g00004 PK_Tyr_Ser-Thr 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273053g00004 - - ahf:112718031 598.586