Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273053g00003 ATGCCAAATTTGATCAAGAATGCTACTGCGGAGAGCAACCTGATGATGTACGCAACGGGTGAGTTCAACTCTGGTGGCCCGTTAGGGGAAAGGTATGGGTTGGTGCAGTGTACTTTGGACCTTACTCGTGAGCAGTGCAGCCAGTGTTTGAATGCTATGTTGGACCAAGTTCCTAAACGCTGTGCTGCAAAAGTTGAATGGATGGTTGGGTCCCCAAGCTGTTTGATGAAGTATGAGGATTATATGTTCTACAATAGTCCAGGATCTTCTTTGCTTAATTCAGCCAAGAAGAGTAGAATTAAGACAAAAACGTTGATAATCATCATAGTGAGTGTGTTGGTAGCTGTAGCTCTACTAAGTTCCGGCTTCTACTTCTTACGGCAGCGGAAGAATAAATTAAATAATGATGCATTATTGTTAGAGAGCATTCCTATATCAATGTGTTATAACTCTCAAAGTCAAGGAGACGAAGATTCATTGAATGCTGACCTTCCTACAGTTCCTCTAATTTGGATTCGACAAAGCACTAATAACTTTTCAGATTGTTGCAAATTAGGGGAAGGTGGATTTGGTCCTGTTTACAAGGGAAGTTTACAAGACGGGACAGAAGTTGCCATCAAAAGGCTCTCAAAAGCATCCGGTCAGGGTTTAGTTGAGTTCATGAATGAAGTAATCTTCATAGCCAAACTGCAACATAGGAATCTTGTGAGATTATTGGGTTGTTGTGTTGAGAATAATGAAAAGCTACTTGTATACGAGTACATGTCAAATTCTAGCCTTGCCTTTCACCTTTTTGACGAGGAGAGAAGAAAGAAATTAAATTGGAGGTTACGATTAAATATTATTAATGGACTTGCAAGAGGAATTTTATATCTTCATGAAGATTCTAGACTCAGAGTGATTCATCGAGATTTGAAAGCTAGCAATGTTCTACTCGACGACGATATGAATCCGAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAAAGGGCCAGAATCAAGAAAATACTACAAGAGTTATGGGCACCTATGGATATATGGCTCCGGAATATGCTATGGAAGGGTTATACTCAGTAAAGTCAGACGTTTTTAGTTTTGGAGTTCTTCTACTAGAAATCATTAGTGGCAAAAGGAATGGTGGATTCTATCTTTCAGAACACGAGTTGGAGACTATGGTGTGA 1185 0.3949 MPNLIKNATAESNLMMYATGEFNSGGPLGERYGLVQCTLDLTREQCSQCLNAMLDQVPKRCAAKVEWMVGSPSCLMKYEDYMFYNSPGSSLLNSAKKSRIKTKTLIIIIVSVLVAVALLSSGFYFLRQRKNKLNNDALLLESIPISMCYNSQSQGDEDSLNADLPTVPLIWIRQSTNNFSDCCKLGEGGFGPVYKGSLQDGTEVAIKRLSKASGQGLVEFMNEVIFIAKLQHRNLVRLLGCCVENNEKLLVYEYMSNSSLAFHLFDEERRKKLNWRLRLNIINGLARGILYLHEDSRLRVIHRDLKASNVLLDDDMNPKISDFGLARAFEKGQNQENTTRVMGTYGYMAPEYAMEGLYSVKSDVFSFGVLLLEIISGKRNGGFYLSEHELETMV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273053g00003 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Stsc273053g00003 394 Pfam Salt stress response/antifungal 15 81 IPR002902 -
Stsc273053g00003 394 Gene3D Phosphorylase Kinase; domain 1 144 254 - -
Stsc273053g00003 394 Gene3D Transferase(Phosphotransferase) domain 1 255 394 - -
Stsc273053g00003 394 SMART serkin_6 179 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273053g00003 394 FunFam Lectin-domain containing receptor kinase A4.3 255 393 - -
Stsc273053g00003 394 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 386 - -
Stsc273053g00003 394 ProSiteProfiles Protein kinase domain profile. 179 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273053g00003 394 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 145 254 - -
Stsc273053g00003 394 Pfam Protein tyrosine and serine/threonine kinase 184 378 IPR001245 GO:0004672|GO:0006468
Stsc273053g00003 394 Gene3D - 1 83 IPR038408 -
Stsc273053g00003 394 SUPERFAMILY Protein kinase-like (PK-like) 166 379 IPR011009 -
Stsc273053g00003 394 ProSiteProfiles Gnk2-homologous domain profile. 1 83 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273053g00003 Stsc-Chr273053 3786 7354 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273053g00003 32 392 Receptor kinase-like Gene Family AT4G23230 47.632 1.10e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc273053g00003 PK_Tyr_Ser-Thr 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273053g00003 - - ahf:112718031 584.334