Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273053g00002 ATGCCAAATTTGATCAAGAATGCTACTGCGGAGAGCAACCTGATGATGTACGCAACGGGTGAGTTCAACTCTGGTGGCCCGTTAGGGGAAAGGTATGGGTTGGTGCAGTGTACTTTGGACCTTACTCGTGAGCAGTGCAGCCAGTGTTTGAATGCTATGTTGGACCAAGTTCCTAAACGCTGTGCTGCAAAAGTTGAATGGATGGTTGGGTCCCCAAGCTGTTTGATGAAGTATGAGGATTATATGTTCTACAATAGTCCAGGATCTTCTTTGCTTAATTCAGCCAAGAAGAGTAGAATTAAGACAAAAACGTTGATAATCATCATAGTGAGTGTGTTGGTAGCTGTAGCTCTACTAAGTTCCGGCTTCTACTTCTTACGGCAGCGGAAGAATAAATTAAATAATGATGCATTATTGTTAGAGAGCATTCCTATATCAATGTGTTATAACTCTCAAAGTCAAGGAGACGAAGATTCATTGAATGCTGACCTTCCTACAGTTCCTCTAATTTGGATTCGACAAAGCACTAATAACTTTTCAGATTGTTGCAAATTAGGGGAAGGTGGATTTGGTCCTGTTTACAAGGGAAGTTTACAAGACGGGACAGAAGTTGCCATCAAAAGGCTCTCAAAAGCATCCGGTCAGGGTTTAGTTGAGTTCATGAATGAAGTAATCTTCATAGCCAAACTGCAACATAGGAATCTTGTGAGATTATTGGGTTGTTGTGTTGAGAATAATGAAAAGCTACTTGTATACGAGTACATGTCAAATTCTAGCCTTGCCTTTCACCTTTTTGACGAGGAGAGAAGAAAGAAATTAAATTGGAGGTTACGATTAAATATTATTAATGGACTTGCAAGAGGAATTTTATATCTTCATGAAGATTCTAGACTCAGAGTGATTCATCGAGATTTGAAAGCTAGCAATGTTCTACTCGACGACGATATGAATCCGAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAAAGGGCCAGAATCAAGAAAATACTACAAGAGTTATGGGCACCTATGGATATATGGCTCCGGAATATGCTATGGAAGGGTTATACTCAGTAAAGTCAGACGTTTTTAGTTTTGGAGTTCTTCTACTAGAAATCATTAGTGGCAAAAGGAATGGTGGATTCTATCTTTCAGAACACGGTCAAAGTCTTCTTGTATATAGTTGGAGACTATGGTGTGAAGGAGAATGTTTGAAGCTGGTAGATCCTATACTAGAAAATACATACACGAGAAATGAAGTTAGAAGGTGTATTCAAATTGGTTTATTGTGTGTACAAGAAGATGCAGTAGATCGACCAACAATGTCCACAGTTGTTGTTATGCTTGCAAGTGAGACAATGACTCTTCCTAATCCTAACCATCCTGCATTTTCCGTTGGAAGAAAGATCAGAGAAGAAGATCAAACGTCAAATAATGCCTCTAATATAGACCCTTCAGTTAATATAGCATCAGTATCAAATATTTTACCTAGATAA 1500 0.386 MPNLIKNATAESNLMMYATGEFNSGGPLGERYGLVQCTLDLTREQCSQCLNAMLDQVPKRCAAKVEWMVGSPSCLMKYEDYMFYNSPGSSLLNSAKKSRIKTKTLIIIIVSVLVAVALLSSGFYFLRQRKNKLNNDALLLESIPISMCYNSQSQGDEDSLNADLPTVPLIWIRQSTNNFSDCCKLGEGGFGPVYKGSLQDGTEVAIKRLSKASGQGLVEFMNEVIFIAKLQHRNLVRLLGCCVENNEKLLVYEYMSNSSLAFHLFDEERRKKLNWRLRLNIINGLARGILYLHEDSRLRVIHRDLKASNVLLDDDMNPKISDFGLARAFEKGQNQENTTRVMGTYGYMAPEYAMEGLYSVKSDVFSFGVLLLEIISGKRNGGFYLSEHGQSLLVYSWRLWCEGECLKLVDPILENTYTRNEVRRCIQIGLLCVQEDAVDRPTMSTVVVMLASETMTLPNPNHPAFSVGRKIREEDQTSNNASNIDPSVNIASVSNILPR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273053g00002 499 ProSiteProfiles Protein kinase domain profile. 179 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273053g00002 499 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 145 254 - -
Stsc273053g00002 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Stsc273053g00002 499 Gene3D Transferase(Phosphotransferase) domain 1 255 460 - -
Stsc273053g00002 499 Pfam Domain of unknown function (DUF3403) 452 499 IPR021820 GO:0004674
Stsc273053g00002 499 Gene3D - 1 83 IPR038408 -
Stsc273053g00002 499 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 488 - -
Stsc273053g00002 499 CDD STKc_IRAK 185 450 - -
Stsc273053g00002 499 FunFam Liguleless narrow1 255 458 - -
Stsc273053g00002 499 SMART serkin_6 179 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273053g00002 499 SUPERFAMILY Protein kinase-like (PK-like) 164 465 IPR011009 -
Stsc273053g00002 499 Pfam Protein tyrosine and serine/threonine kinase 184 448 IPR001245 GO:0004672|GO:0006468
Stsc273053g00002 499 Pfam Salt stress response/antifungal 15 81 IPR002902 -
Stsc273053g00002 499 Gene3D Phosphorylase Kinase; domain 1 145 254 - -
Stsc273053g00002 499 ProSiteProfiles Gnk2-homologous domain profile. 1 83 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273053g00002 Stsc-Chr273053 3786 10426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273053g00002 32 467 Receptor kinase-like Gene Family AT4G23230 48.124 2.38e-144 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc273053g00002 PK_Tyr_Ser-Thr 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273053g00002 - - ahf:112718031 761.525