Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273050g00002 CCCTCACCACTTCCGACAACACCAACACCTACCAACGCCGCCGAAGACGAAACAAAAGGATTGAGGCTAGTGCACCTCCTAATGGCCGCAGCAGAAGCCCTCACCGGCGCCACCAAGTGCCGTGACCTCGCTCGAGTGATATTGCTTCGACTCAAAGAGTTGGTTCCTTCCACCACCACCACCACCACTAGCGCCACCAACATGGAAAGACTCGCGGCGCATTTTACCCAGGCACTACAGGGTTTGCTAGATGGCGCAGGGGGTGGGGGTGCACACAATAATAATAACAACAACAAACAATACAGTTACGGGTCCCACCAAACGGAAATACTAACAGCATTCCAACTGCTTCAAGACATGTCCCCTTACGTCAAGTTCGCCCACTTCACCGCCAATCAGGCCATTCTTGAAGCCATCACAAACCATAGACGGGCCCACATCGTCGATTTCGACATCATGGAAGGCATCCAGTGGGCCTCACTCTTGCAGGCCCTCGCCTCCCAGAACAAAACAGGCCCACACCTCCGCATCACTGCATTGTCTAGAACCGGCTCAGGCCGGAGATCCATTGCCACTGTTCAGGAGACAGGCCGGAGGCTCACCGCCTTCGCCGCCTCCTTGGGCCAGCCCTTCTCCTTCCACCACTGCAGAACAGACCCCGACGAAACGTTTCGGCCCAGCGGGCTGAAGCTAGTTCGCGGGGAGGCTTTGGTGTTCAATTGCATGCTCAACCTCCCGCATTTGCCTTACCGCGCGCGCGATTCGGTTGCGTCGTTCTTGAAGGGCGCGAAGGAGTTGAGCCCGGTGCTGGTGACGATGGCAGAAGAGGATGTTGGGCCCGTGGGAGTGGATGCTGGGTTTGTGGGCCGGTTCATGGACTCACTGCACCACTACTCGGCGTTTTATGATTCGCTGGAGGCCGGGTTCCCGATGGAGGGGCGGGCCCGGGCTTTGGTCGAACGGGTATTTCTTGGGCCTCGAATAGCGGGGTCGTTGGGGCGGATATACCGAACGAGTGAGGGGAAGGAGGAAAGGGGTTCGTGGGGAGAGTGGTTGTGTGGAATGGGGTTCACGGGATTACCGTTGAGCTCAGCCAATCAGAGCCAAGCTAAGCTTCTAATAAATCTGTTCAAAGACGGTTACAAATTGGAACAGTTAGGTCCCAATCAGTTAGTCTTGAGTTGGGAGTCACGCCGTTTGTTTTCTGCATCTGTTTGGTCTTCTTCTTCCTCCCACTCTCACTTTGAACCGTTGTAG 1257 0.5585 PSPLPTTPTPTNAAEDETKGLRLVHLLMAAAEALTGATKCRDLARVILLRLKELVPSTTTTTTSATNMERLAAHFTQALQGLLDGAGGGGAHNNNNNNKQYSYGSHQTEILTAFQLLQDMSPYVKFAHFTANQAILEAITNHRRAHIVDFDIMEGIQWASLLQALASQNKTGPHLRITALSRTGSGRRSIATVQETGRRLTAFAASLGQPFSFHHCRTDPDETFRPSGLKLVRGEALVFNCMLNLPHLPYRARDSVASFLKGAKELSPVLVTMAEEDVGPVGVDAGFVGRFMDSLHHYSAFYDSLEAGFPMEGRARALVERVFLGPRIAGSLGRIYRTSEGKEERGSWGEWLCGMGFTGLPLSSANQSQAKLLINLFKDGYKLEQLGPNQLVLSWESRRLFSASVWSSSSSHSHFEPL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273050g00002 418 ProSiteProfiles GRAS family profile. 14 407 IPR005202 -
Stsc273050g00002 418 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 403 IPR005202 -
Stsc273050g00002 418 Pfam GRAS domain family 23 406 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273050g00002 Stsc-Chr273050 15524 16835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273050g00002 4 408 GRAS Transcription Factor Family AT5G41920 32.381 7.74e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc273050g00002 GRAS 5.9e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273050g00002 - - gmx:100787926 525.783