Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273031g00001 ATGGGGATGGGTTCAAAAATGGAAGGACCGTCTGCCCCAGCAAATCGACGTGACCCTTATGAGGTGTTGTCTGTGTCAAGGGACTCTTCCGATCAAGAAATTAAAACTGCTTACAGAAAGCTAGCTCTCAAGTATCACCCTGACAAAAATGCCAGCAATCCTGAAGCTTCAGAACTATTTAAAGAGGTTGCTTATTCTTATAGTATCTTGTCCGACCCAGAGAAGAGAAGGCAGTATGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATTGACTTGTCTAATCTAGGGACAGTCAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTACCTATCAAGACAACAATTTCAGCTAATGTTCTTGAAGAAGCTCTGAATGGGACAGTTACTGTCAGACCGCTTCCTATTGGAACATCAGTGAGCGGAAAGGTAGAGAAGCAATGCGCTCATTTTTTCGGCGTAACAATAAATGAGCAACAAGCTGAGTCAGGGATTGTAATAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTACTTTACTTTGAACAAGATGCAAATGGTGGCTATGGTTTAGCACTGCAGGAAGATAGTGAGAAAACTGGCAAGGTGACATCTGCTGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACCATGAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGGCTTTCTTTAAGAGGTTGGAAGGTCTTCAACCCTGTGAAGTCTCGGACCTAAAGCCTGGAACTCATATATTTGCTGTTTATGGGGATAACTTTTTTAAGACTGCTAGCTATTCAATTGAGGCAGTATGTGCAAAATCATATGAAGATACTACCCAGAAACTTAAGGACATTGAGGCTCAGATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAAGCAGAATATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGAGAGATATGCAAAAGAAAAGCAATCTGTAGATGAGCTTCTGAAACAAAGGGACGGCATCCATTCATCCTTCACCATTGTCAAATCAACAAATACTAGTGGGACTGCTAGTAACTTAAGCAATGGAAGCTCTAGCAAAATTTCTGGTGATGAATCCAAAGGTGATAGCCCTGAAGACGGAGGGTCAGATGGGAAGGACAAATCAGGCAAGAAGAAGTGGTTTAACCTCAATATTAAGGGATCTGATAAGAGATTGATATAA 1242 0.4147 MGMGSKMEGPSAPANRRDPYEVLSVSRDSSDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVIRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTMNALAMAKDPEGAFFKRLEGLQPCEVSDLKPGTHIFAVYGDNFFKTASYSIEAVCAKSYEDTTQKLKDIEAQILRKRNELRQFEAEYRKALARYQEVTERYAKEKQSVDELLKQRDGIHSSFTIVKSTNTSGTASNLSNGSSSKISGDESKGDSPEDGGSDGKDKSGKKKWFNLNIKGSDKRLI 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273031g00001 413 CDD DnaJ 18 72 IPR001623 -
Stsc273031g00001 413 PRINTS DnaJ domain signature 38 53 IPR001623 -
Stsc273031g00001 413 PRINTS DnaJ domain signature 20 38 IPR001623 -
Stsc273031g00001 413 PRINTS DnaJ domain signature 55 75 IPR001623 -
Stsc273031g00001 413 PRINTS DnaJ domain signature 75 94 IPR001623 -
Stsc273031g00001 413 MobiDBLite consensus disorder prediction 358 413 - -
Stsc273031g00001 413 FunFam Chaperone protein dnaJ 16 3 100 - -
Stsc273031g00001 413 Coils Coil 288 343 - -
Stsc273031g00001 413 MobiDBLite consensus disorder prediction 378 413 - -
Stsc273031g00001 413 SUPERFAMILY Chaperone J-domain 14 88 IPR036869 -
Stsc273031g00001 413 Gene3D DnaJ domain 4 100 IPR036869 -
Stsc273031g00001 413 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Stsc273031g00001 413 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 411 - -
Stsc273031g00001 413 MobiDBLite consensus disorder prediction 358 377 - -
Stsc273031g00001 413 MobiDBLite consensus disorder prediction 1 28 - -
Stsc273031g00001 413 Pfam DnaJ domain 18 80 IPR001623 -
Stsc273031g00001 413 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Stsc273031g00001 413 SMART dnaj_3 17 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273031g00001 Stsc-Chr273031 7555 11708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273031g00001 11 90 C2H2 Transcription Factor Family AT1G74250 43.529 1.72e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273031g00001 - - gmx:100811270 712.99