Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273004g00001 ATGAGCCATAGCAACACACCACCACCGCCTTGCCCTTCCACCATAATACAACAACAACTTCCCTATGGCTATGGCTATGGCTATGTAGCATCAGCATCAGCAGGCACTGCTCCAACTCCAACCTTGACTTCCCCTTGTCAGTCCGGCACCATGCGCTACAAGGGGACGCGAGTCCGGAGTGGGAAGTGGGTGTCGGAGATAAGGTTGCCACGTACTACCAAGCGCATTTGGCTGGGAACATATCCAACACCTGAGATGGCTGCTGCTGCTTACGATGCTGCTACTCTTGCAGTGAGAGGCCCCGAAGCCCATCTCAACTTCCCCAATTTCATACTCTCTTATCCTATTCCTGCTTCCTTCGAGGATTCTGATATTCGCGCTGCCGCTGCCCTGGCTGCCTCCATCGTTGCTCATCATCATTATCAGTCTACGACGACGACACCACCACCACCAGCGATTACTGGTGGTGGTGGTGGAGTTAGTGGACAAGAAGGGATGGTAGTAGTAGGGGATTATTTTGATGAGGATGAGGTGTTGAATATGCCGAGTGTGATCCATGACATGGCCATGGGACTCCAGATTAGCCCCCCAAGGAGCCCTTCTTTCTCCACCTTCGATGACGATGACATTATTTATTCCGATCTCTATGCCCTTTGGTAA 660 0.5182 MSHSNTPPPPCPSTIIQQQLPYGYGYGYVASASAGTAPTPTLTSPCQSGTMRYKGTRVRSGKWVSEIRLPRTTKRIWLGTYPTPEMAAAAYDAATLAVRGPEAHLNFPNFILSYPIPASFEDSDIRAAAALAASIVAHHHYQSTTTTPPPPAITGGGGGVSGQEGMVVVGDYFDEDEVLNMPSVIHDMAMGLQISPPRSPSFSTFDDDDIIYSDLYALW 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273004g00001 219 SUPERFAMILY DNA-binding domain 53 109 IPR016177 GO:0003677
Stsc273004g00001 219 ProSiteProfiles AP2/ERF domain profile. 52 108 IPR001471 GO:0003700|GO:0006355
Stsc273004g00001 219 SMART rav1_2 52 114 IPR001471 GO:0003700|GO:0006355
Stsc273004g00001 219 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Stsc273004g00001 219 Pfam AP2 domain 57 100 IPR001471 GO:0003700|GO:0006355
Stsc273004g00001 219 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Stsc273004g00001 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 46 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273004g00001 Stsc-Chr273004 12704 13649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273004g00001 53 219 AP2-EREBP Transcription Factor Family AT5G52020 44.643 2.22e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc273004g00001 AP2 8.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273004g00001 - - adu:107466884 248.054