Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273000g00004 ATGTGTCTATTCTTCCGGCGGTGGTCAAAACGGTCAAGGGACAATAATAACCCCGAAAACTCCACTACGTGCCGCAAATTCACCATCGCCGAGATAAGATCCGCCACCAATAGCTTCGACCAAGCTTTAATCATAGGCCGCGGAGGCTTCGGTAACGTCTATAAAGGTCAGTTGCAGAAGCAGCGCACCCCCGTGGCCATCAAACGCCTCAAGCAGGGTTCCAATCAAGGAATCCGCGAGTTCGAAACGGAGATCAAGATGCTGTCCCACCTCCGCCACCCTCACCTCGTCTCCCTGATCGGCTACTGCCAAGACCCCGCGGAGATGATCCTCGTGTACGACTTCATGGGGCGTGGAACCCTACGCGACCACCTGTACGAAAACGACAAGAAAGAAGCCCTGTCGTGGAAGAAACGGTTAGAGATATGCCTTGATGCGGCGCGTGGGCTTCACTTCCTGCACAGAGAGAACGTGATCCACCGGGACGTGAAGAGCACCAACATACTGCTGGACGACGAGTGGATCGCGAAAGTTGCGGATTTCGGTTTATCGAAGGACGGGCCCACTGGGTCCCACGTAACGACTGAAGTGAAGGGTAGCGTGGGGTATTTGGATCCGGAGTACTACATGAGCCAGTGGCTGAGTCAGAAGTCTGACGTGTACTCTTTCGGTGTGGTTTTGTTGGAGGTGTTGAGTGGGAGGCCCCCAGTGATCAGGCATGAGGAGTCCCTTGTCACGTGGGTTAAGGGGTGTTATCAAGATGGCAAGATTGATCGGACGGTGGATCCTGCCTTGCAGGGTAGCATCGGGCAGAAGTGCTTGAACAAGTTTGTTGAGGTTGCGTTGAGTTGTTTGAACCAACATGGGAAGGAACGTCCGTTCATGGAGGATGTGGTGAAGGGGTTGGAGTGTGCGTTGAGGCTGCAGCACAACAACAAGAGTCTTGATGACGTGGCAGTTAGCTTCACCGTGATTGTGGGCCATGACCATGACCATGATGATTATTATGGAGAAGACAATAATTCTCCGGGAGTAGTGATGAGCGACTCTCAGTGTACTATTACTACTACTACTGAAAGTAGTAATGCCGTAACCACCGCAACTACAACCACCATCACATCTAAAGAGGATGAGCAAGCTTTGGTGCTGCATGGGGGTCTTCTCTCATCACCTTGCTAA 1179 0.5233 MCLFFRRWSKRSRDNNNPENSTTCRKFTIAEIRSATNSFDQALIIGRGGFGNVYKGQLQKQRTPVAIKRLKQGSNQGIREFETEIKMLSHLRHPHLVSLIGYCQDPAEMILVYDFMGRGTLRDHLYENDKKEALSWKKRLEICLDAARGLHFLHRENVIHRDVKSTNILLDDEWIAKVADFGLSKDGPTGSHVTTEVKGSVGYLDPEYYMSQWLSQKSDVYSFGVVLLEVLSGRPPVIRHEESLVTWVKGCYQDGKIDRTVDPALQGSIGQKCLNKFVEVALSCLNQHGKERPFMEDVVKGLECALRLQHNNKSLDDVAVSFTVIVGHDHDHDDYYGEDNNSPGVVMSDSQCTITTTTESSNAVTTATTTTITSKEDEQALVLHGGLLSSPC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273000g00004 392 ProSiteProfiles Protein kinase domain profile. 39 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273000g00004 392 PANTHER OS07G0166700 PROTEIN 23 309 IPR045272 GO:0004714|GO:0006468
Stsc273000g00004 392 SMART serkin_6 39 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273000g00004 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Stsc273000g00004 392 Pfam Protein tyrosine and serine/threonine kinase 44 301 IPR001245 GO:0004672|GO:0006468
Stsc273000g00004 392 Gene3D Transferase(Phosphotransferase) domain 1 116 326 - -
Stsc273000g00004 392 FunFam Receptor-like protein kinase FERONIA 116 320 - -
Stsc273000g00004 392 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524
Stsc273000g00004 392 CDD STKc_IRAK 45 303 - -
Stsc273000g00004 392 FunFam Receptor-like protein kinase FERONIA 10 115 - -
Stsc273000g00004 392 SUPERFAMILY Protein kinase-like (PK-like) 22 300 IPR011009 -
Stsc273000g00004 392 Gene3D Phosphorylase Kinase; domain 1 23 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273000g00004 Stsc-Chr273000 10216 11394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273000g00004 21 311 Receptor kinase-like Gene Family AT3G51550 56.000 1.32e-111 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc273000g00004 PK_Tyr_Ser-Thr 5.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273000g00004 - - adu:107482052 574.318