Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272g00003 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAATCTGCCCTCGGATATAAGAGAATCAGAAATAGAAGATTTATTCTACAAGTATGGGCGTATCATGGATATTGAATTGAAGATTCCACCCCGCCCTCCGTGTTATTGCTTTGTTGAGTTTGATAATGCTCGGGATGCAGAAGAAGCAATTCGAGGTCGAGATGGGTACAACTTTGATGGTTGTCGTTTAAGGGTGGAGCTTGCCCATGGTGGTAGGGGGCCGTCATCAAGTGATCGCCGTGGCTATGGTGGTGGTGGAGGTGGTGGCAGCAGTGGGGGCCGTTTTGGTGTCTCACGCCATTCTGAATACCGAGTTATTGTTCGTGGGCTTCCCTCTTCTGCATCCTGGCAAGACCTGAAGGATCATATGCGAAAAGCTGGTGATGTATGCTTTGCTGAGGTTTCCCGTGATAGCGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAATATGCCATTCGGAAACTGGATGACACAGAGTTTAGAAATCCTTGGGCGAGGGCTTATATACGGGTGAGGAAGTATGAGGGTAGTCGTTCAAGGAGTCGCAGCAGAAGCCCCAGCAGGAGTAGAAGTCCTATAAGAGATAGAAGATCATTGGAGCGATCTGTGTCTAGGTCACGTTCTAGATCCAGATCTGCATCCCCAATCAAGGCTTCAAGGCCAAGATCACGATCCCGATCTGCATCACCACACCAGGTGCTGTCAGGAAGTGCCTGA 768 0.4818 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGSSGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYEGSRSRSRSRSPSRSRSPIRDRRSLERSVSRSRSRSRSASPIKASRPRSRSRSASPHQVLSGSA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272g00003 255 Gene3D - 2 114 IPR012677 -
Stsc272g00003 255 Gene3D - 115 192 IPR012677 -
Stsc272g00003 255 MobiDBLite consensus disorder prediction 192 224 - -
Stsc272g00003 255 SUPERFAMILY RNA-binding domain, RBD 6 185 IPR035979 GO:0003676
Stsc272g00003 255 CDD RRM2_SF2_plant_like 115 190 - -
Stsc272g00003 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 193 IPR000504 GO:0003723
Stsc272g00003 255 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 247 - -
Stsc272g00003 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Stsc272g00003 255 MobiDBLite consensus disorder prediction 192 255 - -
Stsc272g00003 255 SMART rrm1_1 116 185 IPR000504 GO:0003723
Stsc272g00003 255 SMART rrm1_1 8 78 IPR000504 GO:0003723
Stsc272g00003 255 FunFam serine/arginine-rich splicing factor SR34A-like 115 192 - -
Stsc272g00003 255 FunFam serine/arginine-rich splicing factor SR34A-like 2 114 - -
Stsc272g00003 255 MobiDBLite consensus disorder prediction 225 255 - -
Stsc272g00003 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Stsc272g00003 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 179 IPR000504 GO:0003723
Stsc272g00003 255 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272g00003 Stsc-Chr272 27968 30329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272g00003 4 173 Eukaryotic Initiation Factors Gene Family AT4G34110 25.424 3.70e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272g00003 K12890 - gmx:100800653 361.303