Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272g00002 ATGTCACAACCAAGGCAGAACAAGATGATGATGATGAATCCAAACAGTGCCAAACATGTAACTGGTGACACAACCTATACCAAGATCTTTGTTGGAGGTTTGGCTTGGGAAACAAAAAGAGACACTCTCAAACGTTATTTTGATCAGTTTGGAGAGATCTTAGAAGCTGNNNNNNNNNNCGGAAGATCAAAAGGATATGGCTTTGTAACATTCAAGGACCCAAATTCTGCAATAAGGGCTTGTCAGAATCCATATCCTGTGATAGATGGAAGGAGGGCTAATTGTAACCTTGCAGCTCTTGGTGCACAAAAAATTGATCCATCATCTATGACAGATAGAAAAAGTTTCACTAACCCTTCTTGGAATACAGCACCAATTCCAGTTCATCAAGGAACCTCCACTTATTCTAATCAGCATATTCCACAGTATACCTTTCCTTATCCACCATACAGGTATCCTGGTTACCCTCCCCAGCAAGAAGTATACGAAATGAGTTACTACTATAATGTATTTGGTGGACAACCCTTTCCATTTCGTTGGTTACCAGCATATTACCAACCAATTTATGGCCTAAGTAGACATCAATTCGTTCCAACAACAGCTTATTTGAAAAAGACACAATTTCCTGATATGTCACCTCAGGAGTTCACACCAACTACTGTTGCTTCATCAGAACCTATTTCAGCTTCTTCATCCATTTCTACCACTGGATCAATAACAGGAACTGTAGATACGGGAGGAGGAGGAGGATCACCACAAGAACAGAAATCACCTTAA 777 0.3977 MSQPRQNKMMMMNPNSAKHVTGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAXXXXGRSKGYGFVTFKDPNSAIRACQNPYPVIDGRRANCNLAALGAQKIDPSSMTDRKSFTNPSWNTAPIPVHQGTSTYSNQHIPQYTFPYPPYRYPGYPPQQEVYEMSYYYNVFGGQPFPFRWLPAYYQPIYGLSRHQFVPTTAYLKKTQFPDMSPQEFTPTTVASSEPISASSSISTTGSITGTVDTGGGGGSPQEQKSP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272g00002 258 PANTHER BOULE-RELATED 15 214 - -
Stsc272g00002 258 MobiDBLite consensus disorder prediction 213 258 - -
Stsc272g00002 258 Gene3D - 1 110 IPR012677 -
Stsc272g00002 258 SMART rrm1_1 28 96 IPR000504 GO:0003723
Stsc272g00002 258 SUPERFAMILY RNA-binding domain, RBD 19 98 IPR035979 GO:0003676
Stsc272g00002 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 100 IPR000504 GO:0003723
Stsc272g00002 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272g00002 Stsc-Chr272 15465 17862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272g00002 23 99 C2H2 Transcription Factor Family AT2G19380 39.506 1.60e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272g00002 - - adu:107469851 388.267