Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272981g00002 ATGGCAAATTCAGTTGAAGAACTAGAAACTGCTTCTGAGACCATCAGCAACAGCAACAGAAACAGAAGCAGCAGTAGTTATGATGTTTTCCTGAGTTTTAGGGGCGAAGACACGCGTTGTGCTTTCACTGGTTATCTCTATGATGCCTTGTGCCGCAAGGGAATCAAAACCTTCATAGATAGTGAGGATCTGAGGGTAGGGGAAACGACTCGACCTCAACTCTTTCGCGCCATTGAAGAATCCAAGGTTTCAATAGTTGTTTTCTCCGAGAACTATGCAGACTCCACTTGGTGTCTTGATGAACTTGCCAAGATCTTCGAGTGTCAGAAGGAAAAAGGCCAGCCTGTGTTTCCCATATTCTACAAAATAGAGCCCACAGATGTACGGCATCAGAGAAATAGCTATAAACTTGCCATGGATGCTCATGAAAATAAGTGTGGTAGTTCCTCTGAGAAGGTGAAGAGGTGGAAGGAAGCCTTGCGTGGAGTATCTAACATAGCAGGATATCATTTAAAAGAAGGGTTCGAATTCAAGTTCATTCAAGATATTGTTTGCAAGGTTGCCACAATAATATCTCCTAAACAGATACCTGAGGAGGAGAATGTAGTTGGACTGCAGTTTCGAGTTGCAGAACTGAAGTCAATCTTAGATATTGAGTCTAATATGAACACTTTCATGTTGGGTATCATTGGAACCGGTGGAATTGGCAAAACAACTCTTGCTACGGCTTTGTATAACTCTATTTGCAATGAATTTGAGGGTGCTTGTTTTGTTTCCAATGTCAGAAAAACTTCCAACCAAGATAAGGGAAAAATATGGCTGCAAAAGAAGATCCTGTCAGATATTCTTGGGGTGCAAAAGATCAAGTTGGACTGTACTGAAAAAGGAATACACACAATAAAAGTCAGTCTTAAGTCCAAAAGAGTTCTCATAGTTCTAGATGATGTTGATAAGATAGAGCAGTTGAAAGAATTAGCAGGAGGATGTGACTGGTTTGGTCTTGGAAGCAGAATCATTATAACAACAAGAGATAAACATTTGCTGGTAGCTCATCAGATCAAAAGGATTTATGAAATGGAAATGATGAATGCTCGAGAATCACTCGAGTTGTTTTGTCAGAATGCCTTCAAGATGAGTTCTCCTGCTAGAAACTACCAAGAGTTGTCGAATCGAGCAATAAGCTATGCCAAAGGTCTTCCATTAGCTTTGAAAGTCATAGGCTCAGAGTTGATTGATAAAGATCTGCATTTTTGGGAGTCTTCTTTGGATAAATATGAGAAGAATCTTCATGGAGACATCCAAAATATTCTTAGAGTAAGTTATGATAGTCTTGAATGCAACCAAAAGGAAATTTTCCTGGACATTGCATGTTTTTTCAATGGGAATAGATTGAAATATGTTAAAAGAATACTTGATGGCTGTGACTTTTACACAGACAGTGATATTGAAACACTAGTTGATAAATCTCTTATAACCATTGAAGATGGTTACTTGAGGATGCATGATCTAATACAAGACATGGGTAGAGAGATTGTTAAGCAAGAAGCACCAAAAGAGCCTGGGGAACGCAGTAGGTTATGGCTTTGTGAAGATGTTCTTGAAGTACTAACAGAAAATAAGGGAAATAATAAAACTGAAGGAATGAAACTAGATTGCTATGAAGAAGTCAAGTGCTCTGATAATACCATGGAAATGATGAAGAAACTTAGAGTTCTCATTGTTAGCAATGGAAGCTTCTCATCAAAGCATATTCGTCTTCCGAATACATTAAGACTTGTTGATTGGAAAGGGTACCCTTCAACATCTTTTCCGCCAGGAGGATTTAATCCCAGGAAAATTGCTGCCATCAATTTAACTTGTAGTTCTCTTGTATTAAAGAGGTCATATCAGACATTTGATCAATTGACCTACATGAACTTCTCCTATTGCCAGTCCATTACTTCATTTCCTAATGTGTCTGGAGCCCCAAATTTAAGAGATTTGGTACTTGATGGATGCAAGCGACTAGTTGAGATTCATTATTCAGTTGGATTTCTCTCTAAGCTTGTTTATTTGAGTGCTGCAGGGTGCACTCAACTAGAGAGTTTTCTGCCAGAAATCTTTCTACCATCCCTTGAATATCTTTCACTTGACTTCTGTACAAGACTTAAACATTTGCCAAGAGTGACAGGAAAAATGGAAAAGCTATCAAAGATTTCTATAAAACGTACTGCTGTTAGAGAGCTTCCGCTATCTTTCCGCCATTTTGGGCTTCAATATTTAGACATGACAAATTGTGAGCATCTAGAATATGTTTTTCCAAGATGGTTTCCAAAGCTTAAAACATTGAAAATTGGAGGGTGTTCTCAGTTTCGGAAATCGCTAAATCTACTCCCTTCAGAAAAATATCCTTTGATGAGTTTGCATCTCAAAAGTGCAAGTTTATGGGATGATGATCTTCCCATAATTTTTAGGGTGTTTCCTGACTTAAGAGACTTAATTGTGCCTTTTAACTGCTTTCAGTCAATCCCGTTGAATATTAAGGACCTCATTTCCTTGACAAGTCTTGATGTTAGTTCCTGTCTAAAACTTAGAGACATTCCACCACTTCCTTCTAGCATTCAAAAAGTAGATGCAAGACACTGCAATTACTTAACGCCAGACTCATCATACATGCTTTGGTCACAGATTAGCAAAGAGATAAAAGGATTACAAATTGTGATGCCAAAGACACAGATTCCAGAATGGTTGGACTATTGTGACTCGGGAGGGATCCCCTTCTTATGGGCACGTGGCAGGTTCCCCGTAATGGCTCTAGTGTTGGAGTTTGGCGAAATGGTGTACCAAGATATTACTCTGCATTTGTTCATTGACGATGAGCATATATACAGCCACCGCCCTCAAACACAAAGGCATAGTTTTGCTCTTGCAGAGGATCACGTGCTCTTGTGTGACCTGCGACTATTATTCAGTGATGAAGAATGGAAGAGACTTGATGCTCGAATTGGACATAATAAGGATTGGAAAGCAGTGCAGGTGAAGTGTGAAGCAGGCTTGGCCTTAAGACAGTGGGGAGTTCATGTGTACAAGAATGAAACAAACATGGATGATATTCAATTCATGTGTCCTTATTATTATCATGAAGAACAACAAGAGTCATCCTTGGAGGCTGAGATGGAGGAAGAAACTGTGGCGGCAGTTTCTAGTAGAGAGGAAGAACTATCTTGCTCTGAATTTGCACCTAATGATGATTCATATCATGATAATGATCATAATGGGTCTGTTGTGTTCTGTTCTAACCAACCGCTATTTATACAAATGCCACGAGATGTGAGATCTCTTGCGGCGCTGAAGAATTTTATTGCGCACGCCATTGGTGTTCAAGACACGAAACGGGTGACGAAAATCTACTACAGATATCCGATGGAAGTTGATGGTAATTTTCAGTTCAAGAGTGAACCGCCACAGGGCACGTTGCCTGAGGAGTTTGAAAGCCATGAGGGATCCGTGGCTGGAGATCCGATGACGGAGCCCTTCCATCTTGACCCCGATCAAGATGATGGAAGAGACGAAGATGAGGAAGAGCTAAACTCGTTCAGAATTTCACAGGTGTCATTGGCACAACCCGCTATTTCTCAACCTTACGAATATCCAGATCACTTTTCCACACTGAATCTTGATGCGATGAATTCGGATGTCTGCCTGGGTCAGGGGGGCCCTGATGATGATCCGGCGGCCGAGTTTGAGGTTGGCCAACAATTTGAGAACAAGGAGAAAGTTCTAATGGCAGTTAAGACATACAGCATCAGGAGAGCTGTGCAATTCAAGATACTAGAGAGCGACCAATTTAAAGTATGCTGTGCGGTGCTCTGA 3852 0.4039 MANSVEELETASETISNSNRNRSSSSYDVFLSFRGEDTRCAFTGYLYDALCRKGIKTFIDSEDLRVGETTRPQLFRAIEESKVSIVVFSENYADSTWCLDELAKIFECQKEKGQPVFPIFYKIEPTDVRHQRNSYKLAMDAHENKCGSSSEKVKRWKEALRGVSNIAGYHLKEGFEFKFIQDIVCKVATIISPKQIPEEENVVGLQFRVAELKSILDIESNMNTFMLGIIGTGGIGKTTLATALYNSICNEFEGACFVSNVRKTSNQDKGKIWLQKKILSDILGVQKIKLDCTEKGIHTIKVSLKSKRVLIVLDDVDKIEQLKELAGGCDWFGLGSRIIITTRDKHLLVAHQIKRIYEMEMMNARESLELFCQNAFKMSSPARNYQELSNRAISYAKGLPLALKVIGSELIDKDLHFWESSLDKYEKNLHGDIQNILRVSYDSLECNQKEIFLDIACFFNGNRLKYVKRILDGCDFYTDSDIETLVDKSLITIEDGYLRMHDLIQDMGREIVKQEAPKEPGERSRLWLCEDVLEVLTENKGNNKTEGMKLDCYEEVKCSDNTMEMMKKLRVLIVSNGSFSSKHIRLPNTLRLVDWKGYPSTSFPPGGFNPRKIAAINLTCSSLVLKRSYQTFDQLTYMNFSYCQSITSFPNVSGAPNLRDLVLDGCKRLVEIHYSVGFLSKLVYLSAAGCTQLESFLPEIFLPSLEYLSLDFCTRLKHLPRVTGKMEKLSKISIKRTAVRELPLSFRHFGLQYLDMTNCEHLEYVFPRWFPKLKTLKIGGCSQFRKSLNLLPSEKYPLMSLHLKSASLWDDDLPIIFRVFPDLRDLIVPFNCFQSIPLNIKDLISLTSLDVSSCLKLRDIPPLPSSIQKVDARHCNYLTPDSSYMLWSQISKEIKGLQIVMPKTQIPEWLDYCDSGGIPFLWARGRFPVMALVLEFGEMVYQDITLHLFIDDEHIYSHRPQTQRHSFALAEDHVLLCDLRLLFSDEEWKRLDARIGHNKDWKAVQVKCEAGLALRQWGVHVYKNETNMDDIQFMCPYYYHEEQQESSLEAEMEEETVAAVSSREEELSCSEFAPNDDSYHDNDHNGSVVFCSNQPLFIQMPRDVRSLAALKNFIAHAIGVQDTKRVTKIYYRYPMEVDGNFQFKSEPPQGTLPEEFESHEGSVAGDPMTEPFHLDPDQDDGRDEDEEELNSFRISQVSLAQPAISQPYEYPDHFSTLNLDAMNSDVCLGQGGPDDDPAAEFEVGQQFENKEKVLMAVKTYSIRRAVQFKILESDQFKVCCAVL 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272981g00002 1283 SUPERFAMILY "Winged helix" DNA-binding domain 432 536 IPR036390 -
Stsc272981g00002 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 455 IPR027417 -
Stsc272981g00002 1283 Pfam NB-ARC domain 209 444 IPR002182 GO:0043531
Stsc272981g00002 1283 Gene3D Ribonuclease Inhibitor 718 892 IPR032675 -
Stsc272981g00002 1283 FunFam Disease resistance protein (TIR-NBS-LRR class) 23 192 - -
Stsc272981g00002 1283 ProSiteProfiles TIR domain profile. 25 191 IPR000157 GO:0007165
Stsc272981g00002 1283 Gene3D - 20 188 IPR035897 -
Stsc272981g00002 1283 FunFam Disease resistance protein (TIR-NBS-LRR class) 363 445 - -
Stsc272981g00002 1283 Pfam TIR domain 27 187 IPR000157 GO:0007165
Stsc272981g00002 1283 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 169 IPR035897 -
Stsc272981g00002 1283 Gene3D Ribonuclease Inhibitor 549 717 IPR032675 -
Stsc272981g00002 1283 SUPERFAMILY L domain-like 555 884 - -
Stsc272981g00002 1283 Gene3D - 361 445 IPR042197 -
Stsc272981g00002 1283 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 722 IPR044974 GO:0006952
Stsc272981g00002 1283 Gene3D - 189 356 IPR027417 -
Stsc272981g00002 1283 PRINTS Disease resistance protein signature 226 241 - -
Stsc272981g00002 1283 PRINTS Disease resistance protein signature 841 857 - -
Stsc272981g00002 1283 PRINTS Disease resistance protein signature 396 410 - -
Stsc272981g00002 1283 PRINTS Disease resistance protein signature 303 317 - -
Stsc272981g00002 1283 MobiDBLite consensus disorder prediction 1 23 - -
Stsc272981g00002 1283 SMART till_3 26 166 IPR000157 GO:0007165
Stsc272981g00002 1283 MobiDBLite consensus disorder prediction 1146 1187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272981g00002 Stsc-Chr272981 10764 17839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272981g00002 20 810 WRKY Transcription Factor Family AT4G12020 29.779 2.46e-88 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272981g00002 - - ahf:112771910 1692.94