Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272978g00004 ATGGATGTGCACATTTCAAGTTCAAGTGTCATTCCTGCAGTCATTATAACAGGTCTAGTGATCACAACTTTCTTCCTTCTCGGCTACTACATCTTTGTGACCAAGTTCTACCTTAATTCACAAAGCGGCAGCCTCGTGCGTCTGTGGTTTTCCCTCCGACGCAATGAGGCTCTCATCTCATTCTGCCCAGAGCCGGAGCATTGGGGACTAGAGGAAGCGATGATCTGGTCGATCCCGGTGATTCGTTACAAGAATTGTGACGAAAGCTCGAGCAAGTGCTCGGTTTGCTTGAACGAGTTTCAACAAAATGAGAAGCTGAGGGCTATACCAAACTGCAACCATACCTTTCACATTGATTGCATAGATATTTGGCTGCAAAAGAATGATAATTGTCCACTTTGTAGAGCCATGATTTCCCTACTACCCGGTGGAATCGACGCGGCGGCCGGAGATATCAAAGCAGGGCCTACTACTTCCACTCAGGATCAAATCTCCCAAGTTGAAAATGAAAACCGAGTTGTTAGCGGCTACGATGAAGATTTTGTTGTCATCAATTTGGAAAATGAACATGACACTAGAGATCGAAATTCGGAAGCAGAATAA 603 0.4511 MDVHISSSSVIPAVIITGLVITTFFLLGYYIFVTKFYLNSQSGSLVRLWFSLRRNEALISFCPEPEHWGLEEAMIWSIPVIRYKNCDESSSKCSVCLNEFQQNEKLRAIPNCNHTFHIDCIDIWLQKNDNCPLCRAMISLLPGGIDAAAGDIKAGPTTSTQDQISQVENENRVVSGYDEDFVVINLENEHDTRDRNSEAE 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272978g00004 200 SMART ring_2 93 134 IPR001841 -
Stsc272978g00004 200 PANTHER RING-H2 FINGER PROTEIN ATL16 7 196 IPR044600 GO:0016567|GO:0016740
Stsc272978g00004 200 Pfam Ring finger domain 92 135 IPR001841 -
Stsc272978g00004 200 CDD RING-H2_EL5-like 93 135 - -
Stsc272978g00004 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Stsc272978g00004 200 SUPERFAMILY RING/U-box 75 142 - -
Stsc272978g00004 200 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272978g00004 Stsc-Chr272978 12861 13463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272978g00004 11 186 C3H Transcription Factor Family AT1G04360 41.711 8.62e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272978g00004 - - psom:113317177 155.221