Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272961g00001 ATGGCAGCAAAACCTGAGGTTTCATCTAAACAAATCATCATACCATCTTCTCCAACTCCTAATCATCTTAGACAATTCAAAATCTCCCTCCTTGATCAACTGGCTCCTCCAGTTTACATTCCCATTGTTCTTTTTTACTCTGCCTCTGATTTCAACCATTCATCAGATCTTGATTTCAAAACAATTTCTGAGAAGCTAAAATCTTCTCTGTCAAAAGTCCTTTCCATATATTACCCTTTCTGTGGAAGAGTGAAAGACAACTACACCATTGAGTGCGACGATTCCGGCGTTCTTTTCATTGAGTCTAAAGTTGCCACTGATCTTAGTCACATACTTAACAATCCACAAGTTCATGAAATAACTGAACTCTTGCCATTTGATCCCTACAATCCTCAACTTGCTGACCAAGAAAACAAGGAGCTTCGAGCAACAAATATGGCTGTTCAGTTGAATGAATTCAACTGTGGAGGAATAGCAATTGCTGCTTGCTTCTCACACAAGATTGCCGACGGCGCAACCGCGGCCACGTTCCTCAATTCTTGGGCTGGAATTGCAAGTGGTAGAGGGAACATAGCAACATCGTGGTCTCAAATGGATGCAGCCATGGTTTTCCCACCGAAGGACATAAAATTGGACATAACTCGCGGCATGGTTGGACTTGGACAGACAGAGATTGTGACTAAGAGGTTCATTTTCGACAAGGCGAATTTGTCCAAACTAAAGGACCAGTTCGGGAGCTTCAATCCAACTCGTGTTGAAGCTGTAACAGCACTCATATTGAAATCAGCACTAGAAGCAAAGAGAGTGAATTCTAGTGGGCTTCATCCCGCGTGCATGATGTCCCACGCGGTCAACATTCGCGACCAGATGAACCCACCATTGTCTAAGAACATGTTAGGAAATTTTTGGCAACAAAGTATTTCTCCAATTATGGAGTTTAATGGAGAGGTGAGGTTGCTTGATTTGGCTAACTTGGTAAGAGAAACCATAAGAAAAGTTGATGCTGATTTTATAGGTAAACTTCAAGGTGACGGGTTTGTTAAGATTATTGAGTCCTTAATGGAAGCAAAAATGATGGTGGCACAAAAGGGTATTCCTGGTTATGGCTTTAGTAGTTGGGTAAGATTTGGTTTCTATGAAGTTGATTTTGGATGGGGAAAGCCAAGTTGGGTTTGCACCATTGGTGTTCCCATAGAAAATGCTATCATCTTAATGGCTACAAGAGATGGGGATGGAATAGAGGCATGG 1248 0.4191 MAAKPEVSSKQIIIPSSPTPNHLRQFKISLLDQLAPPVYIPIVLFYSASDFNHSSDLDFKTISEKLKSSLSKVLSIYYPFCGRVKDNYTIECDDSGVLFIESKVATDLSHILNNPQVHEITELLPFDPYNPQLADQENKELRATNMAVQLNEFNCGGIAIAACFSHKIADGATAATFLNSWAGIASGRGNIATSWSQMDAAMVFPPKDIKLDITRGMVGLGQTEIVTKRFIFDKANLSKLKDQFGSFNPTRVEAVTALILKSALEAKRVNSSGLHPACMMSHAVNIRDQMNPPLSKNMLGNFWQQSISPIMEFNGEVRLLDLANLVRETIRKVDADFIGKLQGDGFVKIIESLMEAKMMVAQKGIPGYGFSSWVRFGFYEVDFGWGKPSWVCTIGVPIENAIILMATRDGDGIEAW 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272961g00001 416 Gene3D - 3 212 IPR023213 -
Stsc272961g00001 416 Gene3D - 223 416 IPR023213 -
Stsc272961g00001 416 PANTHER F21J9.9 6 416 - -
Stsc272961g00001 416 Pfam Transferase family 6 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272961g00001 Stsc-Chr272961 4249 5496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272961g00001 4 412 Monolignol Biosynthesis Gene Families AT5G48930 20.872 1.29e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272961g00001 - K13065 gmx:100792323 462.611