Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272960g00001 ATGATGGTAGAAGACACATTCTTCTTCCCGCCAGATTCAGATCTTGATCTTAGTTTCACCAGCACCACCACTGACCGTACATTCACCACCACCGCCTCCTCCTCCGCCCGCACCTCCCTTACACGCACCAGCAGTCTCACCCTCAGTTTCAGCTTCAACGACCGTCTCTCCGCCGCATCCGCCTCCGCAACAACCTCATCTACCTCCGTCCTCCGCCGTCCTCACCGCAGCTCCGACCCACACTGGTCCGCCATCCTTGCTGCTAGTGCCCTCTCCTCCGACGGCCGCCTTCACCTCCGCCATCTCAAGATCCTCCGCCACCTAGGCACCGGAAACCTCGGTCGCGTCTTCCTCTGCCGCCTCCGAGATGACCACCACGGCGGCGCCACCTTCGCCCTCAAGGTCGTCGATAAGGACCTCCTAACCGCCAAGAAACTCTCCCACGTGGAAACCGAAGCTGAGATCCTCCACGCGCTAGACCACCCTTTCCTTCCCACGCTCTACGCGCGCATCGATGCGTCTCACTACACGTGCCTCCTCATCGACTACTGCCCCAACGGCGACCTCCATTCCCTCCTCCGTAAACAGCCTGGCAACAGGCTCCCGGTCCGGGCTGTCCGATTCTTCGCGGCAGAGGTACTGGTCGCGCTCGAGTACCTCCACGCGCTTGGAATCGTTTACAGAGATCTCAAACCAGAGAACGTTCTGTTACGCGAGGACGGCCACGTCATGCTCTCGGATTTCGATCTCTGCTTCAAAGCTGACGTGGCACCAGTTTTCGAGCGCAGGGCACACTCCCCGAGACTAACAACAAACTCTAGAAACCGTTGTTTCTGTTATAACAACCGAAACAAATCTCGATTCACGGAGCGCGTGGTGGCGGAGTTTGTTGCGGAACCAACCACGGCGTTTTCACGATCGTGTGTTGGGACCCACGAGTATCTCGCTCCAGAGCTTGTTTCTGGTAACGGGCACGGTAACGGCGTGGATTGGTGGGCGTTTGGGATTTTCATCTACGAGCTTTTATACGGTACGACGCCGTTTAAGGGGTGTAGCAAAGAAAGCACGCTGCACAATATAGCATCGAGCAGGGACGTGAGATTTTACGTTAATGAGAGAGAGGAATTGGAGGAAGGGATAAGTGAAGCTAGGGATTTGATTGAGAAGCTTTTAGTGAAGGATCCAAGGAGGAGGCTAGGGTGCGCCAGGGGTGCAACGGATATTAAACGGCACCCGTTTTTTGCTGGGATAAAGTGGCCGTTGATTCGAACGTATAAGGCACCGGAGGTGAGGGGGTTGGTGAAGAGGAATAGGTCGTTACAACACGTGACTAGTCACGTGACACATTGTAGGAGGAAAAAGTGGTGGTGGAAAGCGCTTGAGTATGTGATGAGGAAGAAGGGGAACAAATATAATAACTCGATCTCAAACTATAGTAATGGGAATTATTATCATTATGTTAATAGTTATAAGGTTAGGTAA 1482 0.5391 MMVEDTFFFPPDSDLDLSFTSTTTDRTFTTTASSSARTSLTRTSSLTLSFSFNDRLSAASASATTSSTSVLRRPHRSSDPHWSAILAASALSSDGRLHLRHLKILRHLGTGNLGRVFLCRLRDDHHGGATFALKVVDKDLLTAKKLSHVETEAEILHALDHPFLPTLYARIDASHYTCLLIDYCPNGDLHSLLRKQPGNRLPVRAVRFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKADVAPVFERRAHSPRLTTNSRNRCFCYNNRNKSRFTERVVAEFVAEPTTAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGIFIYELLYGTTPFKGCSKESTLHNIASSRDVRFYVNEREELEEGISEARDLIEKLLVKDPRRRLGCARGATDIKRHPFFAGIKWPLIRTYKAPEVRGLVKRNRSLQHVTSHVTHCRRKKWWWKALEYVMRKKGNKYNNSISNYSNGNYYHYVNSYKVR 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272960g00001 493 Coils Coil 366 393 - -
Stsc272960g00001 493 FunFam Serine/threonine-protein kinase OXI1 188 256 - -
Stsc272960g00001 493 FunFam Serine/threonine-protein kinase OXI1 303 432 - -
Stsc272960g00001 493 SUPERFAMILY Protein kinase-like (PK-like) 81 435 IPR011009 -
Stsc272960g00001 493 Pfam Protein kinase domain 104 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272960g00001 493 Pfam Protein kinase domain 305 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272960g00001 493 ProSiteProfiles Protein kinase domain profile. 102 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272960g00001 493 SMART serkin_6 102 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272960g00001 493 Gene3D Phosphorylase Kinase; domain 1 434 447 - -
Stsc272960g00001 493 CDD STKc_phototropin_like 100 430 - -
Stsc272960g00001 493 Gene3D Transferase(Phosphotransferase) domain 1 306 433 - -
Stsc272960g00001 493 Gene3D Phosphorylase Kinase; domain 1 101 187 - -
Stsc272960g00001 493 Gene3D Transferase(Phosphotransferase) domain 1 188 254 - -
Stsc272960g00001 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Stsc272960g00001 493 PANTHER FLIPPASE KINASE 1-RELATED 35 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272960g00001 Stsc-Chr272960 14986 16907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272960g00001 2 493 AGC Kinase Gene Family AT3G14370 66.733 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc272960g00001 Pkinase 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272960g00001 - - lja:Lj0g3v0200189.1 637.876